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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_183_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13303.3 Da PI: 4.8032 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 11 | 54 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia+ ++ g++l+++k+++ cra_locus_183_iso_1_len_927_ver_3 11 WSREQDKAFENALATYPEDtadRWEKIAADVP-GKSLEEIKHHYE 54 ********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.7E-8 | 7 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-5 | 9 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-12 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.899 | 11 | 57 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.3E-9 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.21E-10 | 11 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTADESISSM WSREQDKAFE NALATYPEDT ADRWEKIAAD VPGKSLEEIK HHYELLVDDV 60 SRIESGTVPL PCYTTASDGS SSHAGDEGSG KKGGNFGHFN SDSNHGGKAS RSDQERRKGI 120 AW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-21 | 11 | 75 | 11 | 75 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027097519.1 | 1e-71 | transcription factor SRM1-like | ||||
Refseq | XP_027099997.1 | 6e-72 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 1e-41 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A068VFI4 | 3e-70 | A0A068VFI4_COFCA; Uncharacterized protein | ||||
STRING | XP_008221083.1 | 2e-63 | (Prunus mume) |
Publications ? help Back to Top | |||
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