PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_183_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 122aa    MW: 13303.3 Da    PI: 4.8032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_183_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-111154445
                                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                       W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++ 
  cra_locus_183_iso_1_len_927_ver_3 11 WSREQDKAFENALATYPEDtadRWEKIAADVP-GKSLEEIKHHYE 54
                                       ********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-8759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-5956IPR009057Homeodomain-like
SuperFamilySSF466892.09E-12966IPR009057Homeodomain-like
PROSITE profilePS500906.8991157IPR017877Myb-like domain
PfamPF002493.3E-91154IPR001005SANT/Myb domain
CDDcd001678.21E-101157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTADESISSM WSREQDKAFE NALATYPEDT ADRWEKIAAD VPGKSLEEIK HHYELLVDDV  60
SRIESGTVPL PCYTTASDGS SSHAGDEGSG KKGGNFGHFN SDSNHGGKAS RSDQERRKGI  120
AW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-2111751175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097519.11e-71transcription factor SRM1-like
RefseqXP_027099997.16e-72transcription factor SRM1-like
SwissprotQ9FNN61e-41SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068VFI43e-70A0A068VFI4_COFCA; Uncharacterized protein
STRINGXP_008221083.12e-63(Prunus mume)
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]