PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18199_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 166aa    MW: 18813.9 Da    PI: 6.2268
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18199_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.81.9e-4316114199
                               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                          +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvy
  cra_locus_18199_iso_1_len_833_ver_3  16 PCAACKFLRRKCLPGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVY 89 
                                          7************************************************************************* PP

                               DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                          G+vg i+ lq+q+ +l++el+++++
  cra_locus_18199_iso_1_len_833_ver_3  90 GCVGAISILQRQVLRLQKELDAINA 114
                                          ********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.3915116IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-4316112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDMASSSSSS SYSNSPCAAC KFLRRKCLPG CIFAPYFPPE EPTKFANVHK IFGASNVSKL  60
LNEIQPHQRE DAVNSLAYEA EARLKDPVYG CVGAISILQR QVLRLQKELD AINADLMRYV  120
SNEFPRHQQQ QQQEHGGFDQ NNYEIINHHP NYYNNYNNSG DDPADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-6661241119LOB family transfactor Ramosa2.1
5ly0_B1e-6661241119LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766717.13e-80PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766723.13e-80PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766732.12e-80PREDICTED: LOB domain-containing protein 25-like isoform X2
RefseqXP_016507963.13e-80PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016507964.12e-80PREDICTED: LOB domain-containing protein 25-like isoform X2
SwissprotQ8L8Q34e-68LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A1S4D3Q47e-79A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBLA0A1S4D3W55e-79A0A1S4D3W5_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBLA0A1U7VF657e-79A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
TrEMBLA0A1U7VF795e-79A0A1U7VF79_NICSY; LOB domain-containing protein 25-like isoform X2
STRINGXP_009766717.11e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]