PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1814_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SBP | ||||||||
Protein Properties | Length: 203aa MW: 22492.3 Da PI: 7.6622 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.1 | 1.1e-23 | 153 | 201 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cqve+C+adls+ak+yhrrhkvC++hska+ +lv ++qrfCqqCsrf cra_locus_1814_iso_1_len_1110_ver_3 153 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATRALVGSVMQRFCQQCSRF 201 6***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-23 | 147 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.102 | 151 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.45E-22 | 152 | 201 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-16 | 154 | 201 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEAKLGGKAL HFCGPVVSDM KAVGKRSIEW DLNDWNWDGD LFTAAPLTSV PSDCRSRQFF 60 PLGSEVPTNT RVSNSFSSGS DELVSGTDKG KRELEKRRRL VDVEDEECVD EVGSLNLKLG 120 GQVYPIAEGD AEKWECKSGK KSKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDMHS 180 KATRALVGSV MQRFCQQCSR FVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 6e-22 | 154 | 201 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 99 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027164714.1 | 1e-110 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A068TRT4 | 3e-99 | A0A068TRT4_COFCA; Uncharacterized protein | ||||
STRING | XP_002519316.1 | 3e-88 | (Ricinus communis) |