PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1811_iso_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 651aa MW: 70950.4 Da PI: 6.96 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 254 | 274 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + GtC Gd C +aHg cra_locus_1811_iso_10_len_2938_ver_3 254 PCPDFKK-GTCAKGDACEYAHG 274 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.26E-15 | 27 | 137 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.2E-15 | 34 | 177 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.4E-8 | 53 | 131 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.036 | 62 | 92 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.433 | 62 | 137 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.08E-14 | 64 | 177 | No hit | No description |
PROSITE profile | PS50088 | 12.075 | 97 | 132 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.8E-4 | 97 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.7E-5 | 249 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.328 | 254 | 276 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 254 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 254 | 276 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 284 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.15 | 284 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MEGKFPGQKD DIRCKTCSKL LEFSAADDLA GFISEVEDKG CDVNELSFWY GRRIGSKKMG 60 FEERNALLIA SLYGSIKVLK YLIETGKLDV NKAYGSEGVT ALHCAVAGGS SFSVEVVKLL 120 LDASADVNSV DANGNKPGDL IVPCLKSLSN SKRKTLEILL KGVVSEASDE EDEQGNTRAQ 180 SSKEGNEKKE YPIDVSLPDI NNGIYGSDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA 240 RRRDPKKFHY SCVPCPDFKK GTCAKGDACE YAHGVFESWL HPAQYRTRLC KDETGCSRKV 300 CFFAHKPEEL RPLYASTGSA MPSPKSSSVS SMDMATLSPL ALGSSSLMMP ATXXXXXXXX 360 XXIATPGSRL KAALSARDLD LEMELLGLES IRTQQQQRQQ LMEEMAGLSS PSTWNKDYSR 420 MGDLKPTNLD DVFGSLDPSL LSQLQSLSPK ISTSSTSQLQ SPTGLQMRQN MNQLRASYPS 480 NISSSPARRS SAMGFDSSAA VAAAVMNSRS AAFAKRSQSF IDRGAVGHRA GVTSAANSPS 540 MMSSHLSDWG SPNGKLEWGF HGEDMNKLRK SASFGLRNGN AGGMKQHSMT QNVDEPDVSW 600 VHSLVKDVPP SSANSGIFSP EQKLGGGILH DSSLPSWIDQ LYIEQQEQMV A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104317.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_027110784.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A068V011 | 0.0 | A0A068V011_COFCA; Uncharacterized protein | ||||
STRING | EOY17761 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |