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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_17900_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 31070.4 Da PI: 7.2812 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.8 | 2.1e-06 | 155 | 174 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ cra_locus_17900_iso_1_len_967_ver_3 155 FSCPVCYKTFNRYNNLQMHM 174 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.44E-5 | 148 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 155 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.263 | 155 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
XQYPPHHQYS KSLIPSPNSP PLREALPLLH NLSLKTSSCS RDQNDQLISP CINNNNAMEL 60 DDDDEKKRSK SESSSSTTDD CVTVALHIGL PRSSPTTTTS SSSSSRINSA SSRELKEQSG 120 DLVSAGGLPL NSLNYIKGQY WIPTPSQILM GPTQFSCPVC YKTFNRYNNL QMHMWGHGSQ 180 YRKGPESLRG TQPTAMLKLP CYCCAQGCKH NIDHPRAKPL KDFRTLQTKH KRSLKDHIRA 240 FGSGHGAFEI QIYEEDQEEE DYESASEVDQ DRPISPVL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023907401.1 | 6e-89 | zinc finger protein WIP2-like | ||||
Swissprot | Q8W031 | 9e-72 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
Swissprot | Q9SVY1 | 3e-71 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A438HM34 | 3e-85 | A0A438HM34_VITVI; Zinc finger protein WIP2 | ||||
STRING | VIT_06s0004g01870.t01 | 5e-86 | (Vitis vinifera) | ||||
STRING | XP_010246927.1 | 8e-86 | (Nelumbo nucifera) |
Publications ? help Back to Top | |||
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