PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_17418_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 390aa MW: 43429.1 Da PI: 4.8221

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17418_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90.1	3.8e-28	55	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFsk 63 lp+G++F+P+d el+ e+L++k + + +e+i++++ i+ ++P++Lp +k++ ++ +fF + cra_locus_17418_iso_1_len_1484_ver_3 55 LPAGVKFDPSDIELL-EHLAAKSGLGNskphtfI--DEFIPTLEgnegICCTHPENLP-GAKKDGSSFHFFYR 123 799**********.778888655543554332..233544423344******.556778899* PP NAM 64 rdkkyatgkrknra.......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127 + ++yat+++++++ ++ +W++tgk+k+v++ +g ++g kk++v+y +++ +k+ k++Wvmh+y+ cra_locus_17418_iso_1_len_1484_ver_3 124 TMNAYATERKRRKVqvrdslsNDKVRWHKTGKTKPVME-SGIQKGYKKIMVLYstSNKGSKPDKSNWVMHQYH 195 *986544444566666555999********.999*******6645777788*******9 PP NAM 128 l 128 l cra_locus_17418_iso_1_len_1484_ver_3 196 L 196 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-33	41	215	IPR003441	NAC domain
PROSITE profile	PS51005	28.833	55	215	IPR003441	NAC domain
Pfam	PF02365	1.8E-12	56	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MARSWLIDSR GLAKKVKNAS LPSASQIKDC GANRECPHCH FLIDNRDISH EWPGLPAGVK 60 FDPSDIELLE HLAAKSGLGN SKPHTFIDEF IPTLEGNEGI CCTHPENLPG AKKDGSSFHF 120 FYRTMNAYAT ERKRRKVQVR DSLSNDKVRW HKTGKTKPVM ESGIQKGYKK IMVLYSTSNK 180 GSKPDKSNWV MHQYHLGSNE DEKDGEYVVA KIFCQQPKQI DDDASVKVEE SSDIGSFRTS 240 PRTPKTVTPN PPRAGETPSF DDAIDNVNES SIQEVDFEKQ ATDPQLKDEE IDYTSWFAGE 300 SQDVDLKSVD ELLLCNENID SSTLSCDFGS KTGPSNTLSR DANDLQQGVG NSSSGIAELE 360 NLELDTPPDF QLSDLQFGSQ DSIFSWLDRL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MARSWLIDSR GLAKKVKNAS LPSASQIKDC GANRECPHCH FLIDNRDISH EWPGLPAGVK  60
FDPSDIELLE HLAAKSGLGN SKPHTFIDEF IPTLEGNEGI CCTHPENLPG AKKDGSSFHF  120
FYRTMNAYAT ERKRRKVQVR DSLSNDKVRW HKTGKTKPVM ESGIQKGYKK IMVLYSTSNK  180
GSKPDKSNWV MHQYHLGSNE DEKDGEYVVA KIFCQQPKQI DDDASVKVEE SSDIGSFRTS  240
PRTPKTVTPN PPRAGETPSF DDAIDNVNES SIQEVDFEKQ ATDPQLKDEE IDYTSWFAGE  300
SQDVDLKSVD ELLLCNENID SSTLSCDFGS KTGPSNTLSR DANDLQQGVG NSSSGIAELE  360
NLELDTPPDF QLSDLQFGSQ DSIFSWLDRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153820.1	0.0	SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBL	A0A068U0I6	0.0	A0A068U0I6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400032829	1e-171	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8175	22	29