PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_17221_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 359aa MW: 41168.9 Da PI: 7.7721

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17221_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.2e-32	70	123	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+ cra_locus_17221_iso_1_len_1410_ver_3 70 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 123 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.354	66	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-30	66	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-15	68	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-22	70	124	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	71	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEGSGDTTEC SKNSKNEDED ECYEEEDEKF DEQKQKKLDG GSSSNSTVDE NNNHHDKKPS 60 VRPYVRSKMP RLRWTPDLHL RFVHAVERLG GQDRATPKLV LQLMNIKGLN IAHVKSHLQM 120 YRSKRIDDPS LGIGDHRHLF EGAADRNIYN LSQLPMLRGF NQNHSSPPFR YNRDACWNGL 180 QNLMHNTSMG QSTINKMRIL GSNYSRIMDS SQGSSWKKDE LKSFLDKEAW KGNYNHMDQL 240 KTLKHQEKKS RIDHIQDLMI TSSSNTNSSR LEKEGVRKRK AITESDEIDL TLSLRLGTKT 300 EDEDSFGSQL EDSDNESISY LSLSLFSPSS SSKKIRRRMK EDEIIRENGK GASTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEGSGDTTEC SKNSKNEDED ECYEEEDEKF DEQKQKKLDG GSSSNSTVDE NNNHHDKKPS  60
VRPYVRSKMP RLRWTPDLHL RFVHAVERLG GQDRATPKLV LQLMNIKGLN IAHVKSHLQM  120
YRSKRIDDPS LGIGDHRHLF EGAADRNIYN LSQLPMLRGF NQNHSSPPFR YNRDACWNGL  180
QNLMHNTSMG QSTINKMRIL GSNYSRIMDS SQGSSWKKDE LKSFLDKEAW KGNYNHMDQL  240
KTLKHQEKKS RIDHIQDLMI TSSSNTNSSR LEKEGVRKRK AITESDEIDL TLSLRLGTKT  300
EDEDSFGSQL EDSDNESISY LSLSLFSPSS SSKKIRRRMK EDEIIRENGK GASTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095220.1	4e-91	uncharacterized protein LOC105174731
TrEMBL	A0A068UFP0	5e-89	A0A068UFP0_COFCA; Uncharacterized protein
STRING	EOY07117	5e-80	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41