PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17159_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WOX

Protein Properties

Length: 278aa MW: 31226.9 Da PI: 5.6436

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17159_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	96	156	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n ps+++++e++++l +++e++V++WFqNrRa+ k+ cra_locus_17159_iso_1_len_1255_ver_3 96 RQRWTPTPVQLQILERIFDQgNGAPSKQKIKEITAELaqhgQISETNVYNWFQNRRARSKR 156 89***************99************************************97 PP
2	Wus_type_Homeobox	99.9	1.9e-32	96	158	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G P+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq cra_locus_17159_iso_1_len_1255_ver_3 96 RQRWTPTPVQLQILERIFDQGNGAPSKQKIKEITAELAQHGQISETNVYNWFQNRRARSKRKQ 158 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.916	92	157	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-18	92	163	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-14	94	161	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-18	94	161	IPR009057	Homeodomain-like
CDD	cd00086	3.95E-14	96	158	No hit	No description
Pfam	PF00046	3.7E-19	96	156	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEWDKQQQPQ PPPPSAEEQL NGGTANNNNG GMFVKVMTDE QMEVLRKQIA VYATICEQLV 60 DLHKSLTSHH DLAGVRLGNL YCDPLVTSAG HKITGRQRWT PTPVQLQILE RIFDQGNGAP 120 SKQKIKEITA ELAQHGQISE TNVYNWFQNR RARSKRKQQA AASNNVESEV ETEVESPNEK 180 KTKPEDLQSQ HMPTSRADDL CFQNTDVSSV MHSMDPRNSK AEPMFPSEGS SKPIGSFGQM 240 PFYGSMLPNT RMEQLLGKME VPESYSPYLQ AEDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076418.1	1e-162	WUSCHEL-related homeobox 8-like isoform X1
Swissprot	O81788	4e-88	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A068TZT5	1e-161	A0A068TZT5_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400003980	1e-154	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]