PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_16841_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 347aa MW: 38807.4 Da PI: 8.6034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16841_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	3.9e-33	58	111	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+ Fv+av++LGG+e+AtPk +l+lm+vkgLt++hvkSHLQ+YR+ cra_locus_16841_iso_1_len_1362_ver_3 58 PRLRWTPDLHHTFVQAVQRLGGQERATPKLVLQLMNVKGLTIAHVKSHLQMYRS 111 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-31	54	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.944	54	114	IPR017930	Myb domain
SuperFamily	SSF46689	1.13E-15	56	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	58	113	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-10	59	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MESVEDGNSS DEVIVMKISS SSSSSNNSSV DDVIGDEKKI INSTSTAGVR QYKRSKVPRL 60 RWTPDLHHTF VQAVQRLGGQ ERATPKLVLQ LMNVKGLTIA HVKSHLQMYR SKKIDDHGQV 120 INERNNPMGN IDHILGKFWQ FPTLDRPGMT SSFSNNYSSY YDDNWSSKMM NWMAMAGHGC 180 TDQNVNNIRK PPESAAYHGR SLVEQIYARS TANAKKVPFF SGKYPNFTMQ ESKARTTTDS 240 EEEGKKEELL NVALKRKASN GNGNGIDLSL SLSMKNNNMR QEDEGIISKR KRTHWDIKEE 300 EEVDSNLLCL SLSSSSSAAS KTESYDSIDL NVSIKNPTLA STLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MESVEDGNSS DEVIVMKISS SSSSSNNSSV DDVIGDEKKI INSTSTAGVR QYKRSKVPRL  60
RWTPDLHHTF VQAVQRLGGQ ERATPKLVLQ LMNVKGLTIA HVKSHLQMYR SKKIDDHGQV  120
INERNNPMGN IDHILGKFWQ FPTLDRPGMT SSFSNNYSSY YDDNWSSKMM NWMAMAGHGC  180
TDQNVNNIRK PPESAAYHGR SLVEQIYARS TANAKKVPFF SGKYPNFTMQ ESKARTTTDS  240
EEEGKKEELL NVALKRKASN GNGNGIDLSL SLSMKNNNMR QEDEGIISKR KRTHWDIKEE  300
EEVDSNLLCL SLSSSSSAAS KTESYDSIDL NVSIKNPTLA STLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	59	113	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	293	KRKRTH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090439.1	3e-67	uncharacterized protein LOC113711467 isoform X2
Refseq	XP_027174711.1	3e-68	uncharacterized protein LOC113774362
TrEMBL	A0A068ULT3	6e-66	A0A068ULT3_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29