PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_16831_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 277aa MW: 31155.4 Da PI: 6.7545

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16831_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	2e-11	93	143	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +r h +Er+RR+++ + ++ Lr+llP ++K s ++ +A++YIk+ cra_locus_16831_iso_1_len_859_ver_3 93 KRIVHRDIERQRRQEMANLYASLRTLLPLeY---IKGKRSLSDQINEAIKYIKY 143 6899***********************77...*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-12	90	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-9	91	149	No hit	No description
PROSITE profile	PS50888	13.211	92	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	93	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-9	93	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
ISGSCPEGSR RIIVVVSIMD DDFNSFFPLQ DDDDAFLFQY TVPTTTVSQQ QQNVKQDLLI 60 LPGSAPSLVL ENNNEKKEKN SAAEEEGSIG KQKRIVHRDI ERQRRQEMAN LYASLRTLLP 120 LEYIKGKRSL SDQINEAIKY IKYKEKNIEQ LNSKKDKMKN FFDGNDNIAE GKVGNTSKSS 180 SCSPVDISIR PCSHGGFEIL ISNQIGEERC LLSSVLEVLI EESLTIVNCF CAKVNDKFIQ 240 TIQTEAIHNT GFDALNLSRK LSQRIKAPIN FKCISSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	104	KRIVHRDIERQRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109