PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16828_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

AP2

Protein Properties

Length: 359aa MW: 39782.4 Da PI: 7.6225

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16828_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.3	1.6e-07	76	110	1	40
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 s+y+GV+ +k grW+A+ + +k+++lg f++ e cra_locus_16828_iso_9_len_1482_ver_3 76 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDS-E 110 89******.7**5553..2.26*******9.6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	9.993	1	41	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-5	5	47	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-7	9	43	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.0E-9	9	41	IPR001471	AP2/ERF domain
CDD	cd00018	1.77E-15	76	173	No hit	No description
SuperFamily	SSF54171	7.85E-7	76	111	IPR016177	DNA-binding domain
SMART	SM00380	3.2E-8	77	177	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-6	78	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-6	153	173	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MCLIAFVWVS LGGFDTAHAA ARAYDRAAIK FRGVDADINF NISDYEDDMK QMQNLTKEEF 60 VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE KRLQGPNDHE 120 LLLLILNLLP CILNLNRVPT NSSLPFDFLQ PXAYDKAAIK CNGREAVTNF EPSTYDTEVI 180 YDSQNEGNQH DLDLNLGISN SSAKDNGSSR GVQYHPYDMQ SGRTSKIDNS SAALNNPPLK 240 GLPLVSEHPH VWTGVFPHFV HSYKEQLTEN KTEVGSSQGP PKWAWQMQTQ FSTTPVTVFP 300 SAASSGFSSP VTTTALSASS PLLKAPNPSA LNLCFASCNS SSTSIPHSYH QLRLQQPPP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MCLIAFVWVS LGGFDTAHAA ARAYDRAAIK FRGVDADINF NISDYEDDMK QMQNLTKEEF  60
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE KRLQGPNDHE  120
LLLLILNLLP CILNLNRVPT NSSLPFDFLQ PXAYDKAAIK CNGREAVTNF EPSTYDTEVI  180
YDSQNEGNQH DLDLNLGISN SSAKDNGSSR GVQYHPYDMQ SGRTSKIDNS SAALNNPPLK  240
GLPLVSEHPH VWTGVFPHFV HSYKEQLTEN KTEVGSSQGP PKWAWQMQTQ FSTTPVTVFP  300
SAASSGFSSP VTTTALSASS PLLKAPNPSA LNLCFASCNS SSTSIPHSYH QLRLQQPPP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:17144896, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:20017947, ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087005.1	1e-128	ethylene-responsive transcription factor RAP2-7-like isoform X1
Swissprot	Q8H443	1e-78	AP23_ORYSJ; APETALA2-like protein 3
TrEMBL	A0A068UKW4	1e-125	A0A068UKW4_COFCA; Uncharacterized protein
STRING	XP_009784819.1	1e-121	(Nicotiana sylvestris)

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]