PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16828_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

AP2

Protein Properties

Length: 347aa MW: 38461.8 Da PI: 7.6579

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16828_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.4	1.5e-07	64	98	1	40
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 s+y+GV+ +k grW+A+ + +k+++lg f++ e cra_locus_16828_iso_1_len_1407_ver_3 64 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDS-E 98 89******.7**5553..2.26*******9.6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	9.914	1	29	IPR001471	AP2/ERF domain
SMART	SM00380	0.0015	1	35	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-7	2	29	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-5	2	31	IPR016177	DNA-binding domain
CDD	cd00018	1.55E-15	64	161	No hit	No description
SuperFamily	SSF54171	7.19E-7	64	99	IPR016177	DNA-binding domain
SMART	SM00380	3.2E-8	65	165	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	66	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	141	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
GFDTAHAAAR AYDRAAIKFR GVDADINFNI SDYEDDMKQM QNLTKEEFVH ILRRQSTGFS 60 RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEKR LQGPNDHELL LLILNLLPCI 120 LNLNRVPTNS SLPFDFLQPX AYDKAAIKCN GREAVTNFEP STYDTEVIYD SQNEGNQHDL 180 DLNLGISNSS AKDNGSSRGV QYHPYDMQSG RTSKIDNSSA ALNNPPLKGL PLVSEHPHVW 240 TGVFPHFVHS YKEQLTENKT EVGSSQGPPK WAWQMQTQFS TTPVTVFPSA ASSGFSSPVT 300 TTALSASSPL LKAPNPSALN LCFASCNSSS TSIPHSYHQL RLQQPPP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

GFDTAHAAAR AYDRAAIKFR GVDADINFNI SDYEDDMKQM QNLTKEEFVH ILRRQSTGFS  60
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEKR LQGPNDHELL LLILNLLPCI  120
LNLNRVPTNS SLPFDFLQPX AYDKAAIKCN GREAVTNFEP STYDTEVIYD SQNEGNQHDL  180
DLNLGISNSS AKDNGSSRGV QYHPYDMQSG RTSKIDNSSA ALNNPPLKGL PLVSEHPHVW  240
TGVFPHFVHS YKEQLTENKT EVGSSQGPPK WAWQMQTQFS TTPVTVFPSA ASSGFSSPVT  300
TTALSASSPL LKAPNPSALN LCFASCNSSS TSIPHSYHQL RLQQPPP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:17144896, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:20017947, ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087005.1	1e-127	ethylene-responsive transcription factor RAP2-7-like isoform X1
Refseq	XP_027182766.1	1e-127	ethylene-responsive transcription factor RAP2-7 isoform X1
Swissprot	Q8H443	3e-77	AP23_ORYSJ; APETALA2-like protein 3
TrEMBL	A0A068UKW4	1e-123	A0A068UKW4_COFCA; Uncharacterized protein
STRING	XP_009784819.1	1e-119	(Nicotiana sylvestris)

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]