PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_16814_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 288aa MW: 33887.4 Da PI: 6.4029

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16814_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.5	1.7e-23	20	101	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 +W +qe+++ i++r e+e ++ +k++k lW+ v+ km++ g++r+p qCk+kw+nl +ryk + +++ cra_locus_16814_iso_1_len_1074_ver_3 20 QWGNQETREFIAIRGELEAEFTVTKRNKSLWQVVAGKMKDLGYRRTPDQCKCKWKNLVNRYKGKESADQD--- 89 7***********************************************************99888887... PP trihelix 74 essstcpyfdqle 86 +s+++p++d+l+ cra_locus_16814_iso_1_len_1074_ver_3 90 -NSHQFPFYDELH 101 .47789***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.259	13	77	IPR017877	Myb-like domain
CDD	cd12203	1.98E-25	20	84	No hit	No description
Pfam	PF13837	1.4E-21	20	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
LSGGGGEDDD FPRRDERVLQ WGNQETREFI AIRGELEAEF TVTKRNKSLW QVVAGKMKDL 60 GYRRTPDQCK CKWKNLVNRY KGKESADQDN SHQFPFYDEL HAVFSAKANQ LQQSVHEPEA 120 GSMQSRKRAR GVHGDESSEE HSEDIEDDNE SDDEDVAYGN LAQQKKVEKE KRPRAAASAK 180 SPRQRITTGP SNNGSARASI LQEMLQKFLQ QQQRIEMQWR ESMEKKARER ERYEQEWQQT 240 MENLQKERIM QEQAWRERDE ERRTREESRA ERRDALLTTL LKKLIQEN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258089.1	1e-103	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A314LGE6	1e-101	A0A314LGE6_NICAT; Trihelix transcription factor gt-3b
STRING	XP_009614205.1	1e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23