PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16751_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 142aa MW: 15780.2 Da PI: 9.949

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16751_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.8	1.6e-19	11	59	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie +s+r vtfskRr+g++KKA EL+ ++a+va++++s +gk y y cra_locus_16751_iso_2_len_761_ver_3 11 KKIEKESRRMVTFSKRRKGLFKKADELCSKTGAKVAIVVISASGKPYPY 59 68******************************************98866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.8E-20	3	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.81	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-20	4	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-15	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-22	12	59	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.82E-15	17	57	No hit	No description
PRINTS	PR00404	6.6E-15	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-15	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGSGKKKIEI KKIEKESRRM VTFSKRRKGL FKKADELCSK TGAKVAIVVI SASGKPYPYG 60 DIEAIDTALN NSGGGGCNFN AYGVVRESSS YGVPSRGNNI SFKKWLNEIN VEQCDDIKKL 120 LMLKKELEEA KETILRAEVE SW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2337	17	57