PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1664_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 738aa    MW: 83085.8 Da    PI: 5.3883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1664_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.22.9e-1203657351374
                                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                          l++lL+ cA+av+++d + a+++L++++e++sp+gd mqRla+y++ +L+ar+a+s++++ykal + +ts    
  cra_locus_1664_iso_1_len_2608_ver_3 365 LRTLLTLCAQAVAADDRRTANEFLKQIREHSSPTGDGMQRLAHYLAAGLEARMAGSGTQIYKALISMPTS---A 435
                                          5789************************************************************999999...9 PP

                                 GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                          ++ l+a++l+  ++P+ k+s++  N++I + +e+++r+HiiDf+i++G+QWp+L+q L+sRp+gpp+lRiTg++
  cra_locus_1664_iso_1_len_2608_ver_3 436 VDLLKAYQLYLAACPFRKISNFFSNKTIWNVAEKASRLHIIDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGID 509
                                          ************************************************************************** PP

                                 GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                           p++g   +e++eetg+rL+++Ae+++vpfefn+ +a+++e+++ e+L+++ +E+l+Vn+ ++  +llde+v +
  cra_locus_1664_iso_1_len_2608_ver_3 510 FPNPGfrPSERVEETGHRLSNYAETFRVPFEFNA-IAQKWETITAEDLKIHDDEVLVVNCLYRFRNLLDETVVV 582
                                          ****9*****************************.7************************************** PP

                                 GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                          +s+r+ vL+l+++++P+v+++   +  +n++ F +rf eal +ys+ fd++ea++pre +er+ +E+ ++gre+
  cra_locus_1664_iso_1_len_2608_ver_3 583 NSPRNIVLNLIRRIKPDVFILGIVNGAYNAPFFITRFREALFHYSSWFDMIEATIPREIHERMLIEKTIFGREA 656
                                          ************************************************************************** PP

                                 GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                          +nv+acegaer+er et+++W+ r ++aGF+++pl++++ k ak  ++ +++d + ++e+s++l++gWk+r  +
  cra_locus_1664_iso_1_len_2608_ver_3 657 MNVIACEGAERIERPETYKQWQVRNMRAGFEQLPLNDEILKMAKERVKAYHKD-FVIDEDSQWLLQGWKGRIFY 729
                                          ***************************************************77.******************** PP

                                 GRAS 369 svSaWr 374
                                          ++S+Wr
  cra_locus_1664_iso_1_len_2608_ver_3 730 ALSSWR 735
                                          *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.359339716IPR005202Transcription factor GRAS
PfamPF035141.0E-117365735IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDRTLSGSHQ GATTGIKFND QVRSLVPNPN LIYNFCVNET AVDPNYTSNL SVQADLDPYT  60
CVPLSYGDLP EDYDFSDVVL KYINEMLMEE DMEDKAGMFQ ELAALQAAEK SFYDVLGEKY  120
PPSEDQQLGN LNSSLANCEE NSLEDCSSYS GGLWCPNWTS DNSLHDPVQL PPFSVELVSS  180
TTSQSSHTSS SSSGTVSDGP LDSPDSILTI SDIFSDSKSV LQFQKGIEEA SKFLPHDNAL  240
LFDFRDNGFL GKDLNDKSVS VKLENHESVY APEGTRGKKN PLNEDADLLV GRSSKQLAVY  300
TESTVRSEMF DMVLLCSGGK NESDLRKALQ NGSSKSTPQN SQLKGSNGGK SRGKKQGRKR  360
NVVDLRTLLT LCAQAVAADD RRTANEFLKQ IREHSSPTGD GMQRLAHYLA AGLEARMAGS  420
GTQIYKALIS MPTSAVDLLK AYQLYLAACP FRKISNFFSN KTIWNVAEKA SRLHIIDFGI  480
MYGFQWPCLI QRLSSRPGGP PKLRITGIDF PNPGFRPSER VEETGHRLSN YAETFRVPFE  540
FNAIAQKWET ITAEDLKIHD DEVLVVNCLY RFRNLLDETV VVNSPRNIVL NLIRRIKPDV  600
FILGIVNGAY NAPFFITRFR EALFHYSSWF DMIEATIPRE IHERMLIEKT IFGREAMNVI  660
ACEGAERIER PETYKQWQVR NMRAGFEQLP LNDEILKMAK ERVKAYHKDF VIDEDSQWLL  720
QGWKGRIFYA LSSWRPVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5437273626380Protein SCARECROW
5b3h_A7e-5437273625379Protein SCARECROW
5b3h_D7e-5437273625379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110972.10.0scarecrow-like protein 14
RefseqXP_027110973.10.0scarecrow-like protein 14
RefseqXP_027110974.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A068TVQ00.0A0A068TVQ0_COFCA; Uncharacterized protein
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]