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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16537_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 54289.7 Da PI: 9.1039 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 201 | 224 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ L++H + H cra_locus_16537_iso_4_len_1813_ver_3 201 YVCSVCGRKCKTNLALRKHFKQlH 224 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 4.4E-6 | 122 | 191 | IPR029060 | PIN domain-like |
SMART | SM00355 | 0.0031 | 201 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 201 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 203 | 224 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.20E-12 | 230 | 355 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 4.4E-6 | 286 | 350 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
XSFQKLSKVR KSFLPSSLFP LLTVKPTPTA SNCHPKPIKI AMFNSSVTSI EFLGSSPTLC 60 PLPLFQLKIT KSHSLTWPLE PSRPLKSLSI FRQKWLIKAC GTAADKEIDM VRTKEGVYAA 120 KAKKVVVLWD LDNKPPRGPP FQAAMALKKV AQNFGELVDI SAYANRHAFI HLPQWVVEER 180 RERRNLDFLE RKGISAPAEP YVCSVCGRKC KTNLALRKHF KQLHERERQK KLNRMSSLKG 240 KKRQRFKERF IDGNEKYIEA ARSLITPKVG YGLAQELRRA GVFVKTVADK PQAADWALKR 300 QMQHSMSRGI DWLFLVSDDS DFSDMLRRAR EANLGTVVVG DWHRALGRQA DLWVPWNGVE 360 NGEITEEDLM LRRARRGFEG RNSSRFSVSV FDGAVTGEGR VDSVVKELIE EMQFDRAGIS 420 VFSEGEDGSE EDWIRARLGG RGNVHDEVEE SVSEDEEGDY LLDIEYDGEE EDDVHFY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016492825.1 | 0.0 | PREDICTED: uncharacterized protein LOC107812283 | ||||
TrEMBL | A0A1S4BVD1 | 0.0 | A0A1S4BVD1_TOBAC; uncharacterized protein LOC107812283 | ||||
STRING | XP_009770731.1 | 0.0 | (Nicotiana sylvestris) |