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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1647_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 289aa MW: 32028.1 Da PI: 8.4575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 48 | 91 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qk cra_locus_1647_iso_1_len_1453_ver_3 48 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQK 91 789*****************77.*********.**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.31E-14 | 42 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.284 | 43 | 97 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-16 | 46 | 91 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 47 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-10 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-10 | 48 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-8 | 50 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGLPGLHSLQ PVTNSNIAGQ NSNNSGSGVA ADDPSKKVRK PYTITKSRES WTEQEHDKFL 60 EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KAPKNAVHQV GGLVPSSSSL VEPTYVIRPD 120 SLSVPRNSFS NAALSPWTYN SAPTATMSHM SKDDVGLGGS IVVHNNSSSS NESTPRIWPL 180 NESNDQLKEK NKLPARMIPD FSQVYSFIGS IFDPSAKGDH LQRLRKMDPI NVETVLMLMR 240 NLSVNLMSPE FEDHRRVIVS YSVGREEDKE NVPNDIIKSI NRGNADICM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108430.1 | 1e-133 | protein REVEILLE 3-like isoform X1 | ||||
Refseq | XP_027115285.1 | 1e-133 | protein REVEILLE 3-like isoform X1 | ||||
Swissprot | Q8H0W3 | 7e-75 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A068UME0 | 1e-130 | A0A068UME0_COFCA; Uncharacterized protein | ||||
STRING | VIT_15s0046g02260.t01 | 1e-105 | (Vitis vinifera) | ||||
STRING | XP_009617756.1 | 1e-104 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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