PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1643_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 229aa MW: 25725.3 Da PI: 9.298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1643_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H cra_locus_1643_iso_4_len_1364_ver_3 76 FECQYCFKGFANSQALGGHQNAH 98 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.51E-6	72	103	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-4	74	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.24	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
XFLYPSSKSS CQEKKLKLFG FELDPCQNKE SFHKGSLEND HESVNSSSST ISTVGGKVKS 60 VAITTVLPAE QENKKFECQY CFKGFANSQA LGGHQNAHKK ERLKKKRLQL QARKASISYY 120 LQQPLLFQNN NSSSSSPIFV HDYSNNSYYS PHEFTISHDE LSQSQISFSS NYDHHGGGSQ 180 QLKAKWYARP VPFQPDPSSS CKFTLTHVEK SRENRAGSSV DLQLGLGFH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095783.1	6e-59	zinc finger protein 5
TrEMBL	A0A068TY15	1e-57	A0A068TY15_COFCA; Uncharacterized protein
STRING	EOY00328	5e-51	(Theobroma cacao)