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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1643_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25725.3 Da PI: 9.298 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H cra_locus_1643_iso_4_len_1364_ver_3 76 FECQYCFKGFANSQALGGHQNAH 98 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.51E-6 | 72 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 74 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.24 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
XFLYPSSKSS CQEKKLKLFG FELDPCQNKE SFHKGSLEND HESVNSSSST ISTVGGKVKS 60 VAITTVLPAE QENKKFECQY CFKGFANSQA LGGHQNAHKK ERLKKKRLQL QARKASISYY 120 LQQPLLFQNN NSSSSSPIFV HDYSNNSYYS PHEFTISHDE LSQSQISFSS NYDHHGGGSQ 180 QLKAKWYARP VPFQPDPSSS CKFTLTHVEK SRENRAGSSV DLQLGLGFH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095783.1 | 6e-59 | zinc finger protein 5 | ||||
TrEMBL | A0A068TY15 | 1e-57 | A0A068TY15_COFCA; Uncharacterized protein | ||||
STRING | EOY00328 | 5e-51 | (Theobroma cacao) |