PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16414_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 377aa MW: 43578.6 Da PI: 4.8289

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16414_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3.1e-34	56	147	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 Fl+k++e+++d+ ++ ++sws+ gnsfvv+d++ f++ +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ cra_locus_16414_iso_1_len_1915_ver_3 56 FLTKTFEMVDDSGTDYIVSWSRGGNSFVVWDPHAFSTGLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR----- 123 9**************************************************************999..... PP XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 kekiweFkhksFkkgkkellekikrkks 102 weF+++ F kg+k+ll++i+r+k cra_locus_16414_iso_1_len_1915_ver_3 124 ----WEFANEAFLKGHKHLLKNIRRRKA 147 ....*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-37	52	145	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.67E-35	52	145	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.5E-59	52	145	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-19	56	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-30	56	145	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-19	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	95	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-19	107	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MDPLFSVKQE YTEYSDYHGL SSASEAPPPT AEPGSMMMLS PPQPMEGLHD MGPPPFLTKT 60 FEMVDDSGTD YIVSWSRGGN SFVVWDPHAF STGLLPRFFK HNNFSSFVRQ LNTYGFRKID 120 PDRWEFANEA FLKGHKHLLK NIRRRKAPSS PVSTQQALGP CVEVGRFGVD GEVDRLRRDK 180 EVLMVELVKL RQQQQNTRSY LQSMELRLQQ TEKKQQQMMS FLAKAMQNPE FIHQLVQQKD 240 KRKELEEAFT KKRRRPIDQR HNSGEGGSNP IKIEPSEYQD PYNYHGYQVS ELEALALEMQ 300 GFSRARREQE QEEERVELDK ELDEGFWEEL LNEGFDEEGD VQVTKQGEEE EEQQEEDVNV 360 LADRLGFLGS TSISGTR

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MDPLFSVKQE YTEYSDYHGL SSASEAPPPT AEPGSMMMLS PPQPMEGLHD MGPPPFLTKT  60
FEMVDDSGTD YIVSWSRGGN SFVVWDPHAF STGLLPRFFK HNNFSSFVRQ LNTYGFRKID  120
PDRWEFANEA FLKGHKHLLK NIRRRKAPSS PVSTQQALGP CVEVGRFGVD GEVDRLRRDK  180
EVLMVELVKL RQQQQNTRSY LQSMELRLQQ TEKKQQQMMS FLAKAMQNPE FIHQLVQQKD  240
KRKELEEAFT KKRRRPIDQR HNSGEGGSNP IKIEPSEYQD PYNYHGYQVS ELEALALEMQ  300
GFSRARREQE QEEERVELDK ELDEGFWEEL LNEGFDEEGD VQVTKQGEEE EEQQEEDVNV  360
LADRLGFLGS TSISGTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-23	54	150	18	125	Heat shock factor protein 1
5hdg_A	9e-24	54	145	8	110	Heat shock factor protein 1
5hdn_A	9e-24	54	145	8	110	Heat shock factor protein 1
5hdn_B	9e-24	54	145	8	110	Heat shock factor protein 1
5hdn_C	9e-24	54	145	8	110	Heat shock factor protein 1
5hdn_D	9e-24	54	145	8	110	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	254	KRKELEEAFTKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115041.1	0.0	heat stress transcription factor A-2b-like isoform X1
Swissprot	Q6VBB2	1e-128	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A068U6A9	0.0	A0A068U6A9_COFCA; Uncharacterized protein
STRING	XP_009631618.1	1e-168	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]