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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16413_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 31664.6 Da PI: 6.0419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 7.6e-51 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lppGfrF P+deelv++yL kk+++ ++++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r cra_locus_16413_iso_1_len_1016_ver_3 10 LPPGFRFYPSDEELVCHYLYKKIANGGEVSKDTLVEIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGFR 82 79**********************999888899***************88888999***************** PP NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +nrat++gyWkatgkd++v++ ++++vg++ktLvfyk+rap+g kt W+mhe+rle cra_locus_16413_iso_1_len_1016_ver_3 83 TNRATTTGYWKATGKDRTVIHPvTRSVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 139 ********************9988899***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-59 | 8 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.622 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANGGEVSK DTLVEIDLHT CEPWQLPEVA 60 KLNSTEWYFF SFRDRKYATG FRTNRATTTG YWKATGKDRT VIHPVTRSVV GMRKTLVFYK 120 NRAPNGIKTG WIMHEFRLEN PLLPPKEDWV LCRVFHKAKT ENNSDQYIDD FLPGGATSPT 180 LATSPPPDNS SFTARDYHHN ISAFSATHNP PQKTEISKSQ LLSPPPIDQI TPISKCEEEP 240 YGFLFDLSFG ETNLKDHNGV SVDLEEMQFD DDNGMIFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-47 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-47 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-47 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-47 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-47 | 9 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-47 | 9 | 163 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096438.1 | 1e-127 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | Q84TE6 | 2e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A068U6G4 | 1e-124 | A0A068U6G4_COFCA; Uncharacterized protein | ||||
STRING | XP_009607926.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |