PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16366_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 311aa MW: 35513.8 Da PI: 7.907

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16366_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.1	3.2e-31	60	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkk 67 lppG rF P++e+lv++yL k +g++ +vi+e+d+y+++P +Lp+ ++ ++++wy ++ r + cra_locus_16366_iso_5_len_1175_ver_3 60 LPPGARFYPSEEQLVCYYLSSKNDGSNYYGIDVIREIDLYSYDPFNLPEmscfRFGRggRRRHWYCYVGRIIR 132 79***********************888899***********5477733332255588888887665 PP NAM 68 yatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +r +r + sgyWk+ gk k+++ ++ ++g++k++vfy g + ++++ktdWvm ey+l cra_locus_16366_iso_5_len_1175_ver_3 133 ----ERGRRRAGSGYWKKRGKVKDIVGGgaaEKIAMGTRKSFVFYLGdSPKNAVKTDWVMYEYAL 193 ....47888889**********976556666******993555678*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-37	52	209	IPR003441	NAC domain
PROSITE profile	PS51005	39.275	60	209	IPR003441	NAC domain
Pfam	PF02365	1.0E-18	61	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
XRRPVRHNPI PRPPKLDHQA KLFPNPPLKP XPPFQTEEFS EEPFRMEDLR APVVPTWNSL 60 PPGARFYPSE EQLVCYYLSS KNDGSNYYGI DVIREIDLYS YDPFNLPEMS CFRFGRGGRR 120 RHWYCYVGRI IRERGRRRAG SGYWKKRGKV KDIVGGGAAE KIAMGTRKSF VFYLGDSPKN 180 AVKTDWVMYE YALGDQNMAS FVLCRVFLRS CRCTNLEKHV VVSFCGDDSI ATVHRCVGVQ 240 CEGTTASVIA ESKSHNNNFH DNDNEDLKLS SGLDTVNQII HEPMNEKELI AISEGDFIEL 300 NDLRCPLVGI D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-26	59	207	16	163	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-26	59	207	16	163	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-26	59	207	16	163	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-26	59	207	16	163	NO APICAL MERISTEM PROTEIN
3swm_A	9e-26	59	207	19	166	NAC domain-containing protein 19
3swm_B	9e-26	59	207	19	166	NAC domain-containing protein 19
3swm_C	9e-26	59	207	19	166	NAC domain-containing protein 19
3swm_D	9e-26	59	207	19	166	NAC domain-containing protein 19
3swp_A	9e-26	59	207	19	166	NAC domain-containing protein 19
3swp_B	9e-26	59	207	19	166	NAC domain-containing protein 19
3swp_C	9e-26	59	207	19	166	NAC domain-containing protein 19
3swp_D	9e-26	59	207	19	166	NAC domain-containing protein 19
4dul_A	8e-26	59	207	16	163	NAC domain-containing protein 19
4dul_B	8e-26	59	207	16	163	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027148938.1	1e-102	NAC domain-containing protein 72-like
TrEMBL	A0A068U120	1e-93	A0A068U120_COFCA; Uncharacterized protein
STRING	XP_009771077.1	3e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13528	13	14