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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16366_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34223.2 Da PI: 8.4027 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.6 | 3.3e-25 | 60 | 180 | 1 | 116 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkk 67 lppG rF P++e+lv++yL k +g++ +vi+e+d+y+++P +Lp+ ++ ++++wy ++ r + cra_locus_16366_iso_2_len_1144_ver_3 60 LPPGARFYPSEEQLVCYYLSSKNDGSNYYGIDVIREIDLYSYDPFNLPEmscfRFGRggRRRHWYCYVGRIIR 132 79*************************888899***************5477733332255588888887665 PP NAM 68 yatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkg 116 +r +r + sgyWk+ gk k+++ ++ ++g++k++vfy g++pk cra_locus_16366_iso_2_len_1144_ver_3 133 ----ERGRRRAGSGYWKKRGKVKDIVGGgaaEKIAMGTRKSFVFYLGDSPKN 180 ....47888889**************976556666**********9977763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-29 | 52 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.708 | 60 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 61 | 179 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
XRRPVRHNPI PRPPKLDHQA KLFPNPPLKP XPPFQTEEFS EEPFRMEDLR APVVPTWNSL 60 PPGARFYPSE EQLVCYYLSS KNDGSNYYGI DVIREIDLYS YDPFNLPEMS CFRFGRGGRR 120 RHWYCYVGRI IRERGRRRAG SGYWKKRGKV KDIVGGGAAE KIAMGTRKSF VFYLGDSPKN 180 AVKTXLGHAS FVLCRVFLRS CRCTNLEKHV VVSFCGDDSI ATVHRCVGVQ CEGTTASVIA 240 ESKSHNNNFH DNDNEDLKLS SGLDTVNQII HEPMNEKELI AISEGDFIEL NDLRCPLVGI 300 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 59 | 197 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 59 | 197 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 59 | 197 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 59 | 197 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 59 | 197 | 19 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 59 | 197 | 16 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 59 | 197 | 16 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027089971.1 | 2e-90 | NAC domain-containing protein 55-like | ||||
Refseq | XP_027148938.1 | 2e-90 | NAC domain-containing protein 72-like | ||||
TrEMBL | A0A068U120 | 3e-82 | A0A068U120_COFCA; Uncharacterized protein | ||||
STRING | XP_009771077.1 | 3e-77 | (Nicotiana sylvestris) |