 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_1635_iso_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 202aa MW: 23320.1 Da PI: 7.5098 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_1635_iso_2 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.4 | 1.4e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t eq++ Le+ Fe ++++ e++ eLAk+lgL+ rq+ +WFqNrRa++k
cra_locus_1635_iso_2_len_940_ver_3 92 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 145
56789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.8 | 2.7e-42 | 91 | 182 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75
ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk+
cra_locus_1635_iso_2_len_940_ver_3 91 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLKA 165
69************************************************************************* PP
HD-ZIP_I/II 76 enerLekeveeLreelk 92
+ ++L ke+++L++e+
cra_locus_1635_iso_2_len_940_ver_3 166 DYDSLLKEKDKLKAEVI 182
*************9875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MAGRTLLYGS TGVASSVNPV PIQNQIVPGS SSEPHNSIFM SASSSSFLGP RSMVSFEDVN 60
GRKRTEKSFY GPFDQEDNGD EDLDEYFRQP EKKRRLTVEQ VQFLEKSFEV ENKLEPERKI 120
ELAKELGLQP RQIAIWFQNR RARWKTKQLE KDYDVLQASY NNLKADYDSL LKEKDKLKAE 180
VISSPFLNFV ISFPRNIVIW LX
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
