PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16332_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 385aa MW: 43390.9 Da PI: 9.1305 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 lppGfrF Ptdeel+v+yL++kv+g++++l ++i evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r cra_locus_16332_iso_4_len_1641_ver_3 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFNL-QIIGEVDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSR 85 79****************************.89***************7777799****************** PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl cra_locus_16332_iso_4_len_1641_ver_3 86 PNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 *****************9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 9 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.964 | 14 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-26 | 15 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-62 | 184 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MGVQETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FNLQIIGEVD LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLS EPPRKNGSAR VSINFXNXIK KNEINYISIA NSIGNXFXIL 180 GNLQLDDWVL CRIYKKNSGG AAKQLSGVNS KEYSHGSSSS SSSQFDDMLE SLPEIDDRFF 240 SLPRMNSLKT LHQDQKINLQ TLGPGSIDWA TLAGLSSVPE LLPVGQNQAH QIHQAGQGNV 300 NPNDVVSGHR DMFVPSFQQM CHVDEEVQSG LRTHNRVDNS GFLQPPPQQQ QQQQHSSNLM 360 SFHQNSIDPY GIRYPTQMGN VGYRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-102 | 1 | 200 | 7 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063418.1 | 1e-171 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-150 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A2U9IY23 | 0.0 | A0A2U9IY23_CATRO; NAC domain containing protein 055 | ||||
STRING | XP_009594219.1 | 1e-161 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Publications ? help Back to Top | |||
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