PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16332_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29181.1 Da PI: 8.8842 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Ptdeel+v+yL++kv+g++++l ++i evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+ cra_locus_16332_iso_1_len_905_ver_3 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFNL-QIIGEVDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRP 86 79****************************.89***************7777799******************* PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl cra_locus_16332_iso_1_len_905_ver_3 87 NRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 ****************9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-64 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.567 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGVQETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FNLQIIGEVD LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLA NVDRSAGKRT NLRLDDWVLC RIYNKKGTLE KHYNVDQKEV 180 HFSDSEEQKP KVELLPYNRM GAAAPQVQVP QFVTPQRMND YSHFDTSESL PKLHTDSSSS 240 EEFMNDKEVQ SEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-103 | 1 | 171 | 7 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099683.1 | 1e-133 | NAC domain-containing protein 2-like | ||||
Swissprot | A0A3Q7HH64 | 1e-105 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A2G9HDB1 | 1e-131 | A0A2G9HDB1_9LAMI; Uncharacterized protein | ||||
STRING | XP_010674351.1 | 1e-110 | (Beta vulgaris) |
Publications ? help Back to Top | |||
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