PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16198_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 374aa MW: 42415.9 Da PI: 9.5451

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16198_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.4	1.1e-17	101	190	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f k ++ps+v+ s +l++pk+f++ h + ++ t+tl de+g++++ ++ +++++ l++GW++F a++ cra_locus_16198_iso_5_len_1587_ver_3 101 FAKCMLPSNVTYSFWLIIPKRFCSLHL-P-SQDSTITLVDEWGKEYKTNYLIDRHG----LSGGWRGFSIAHR 167 889******************8884.3.35569***********888887....********* PP --TT-EEEEEE-SSSEE..EEEEE- CS B3 74 LkegDfvvFkldgrsefelvvkvfr 98 L gD+++F l++ + l+v+++r cra_locus_16198_iso_5_len_1587_ver_3 168 LLKGDILIFCLIEPCK--LKVHIVR 190 ********997444..5888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-21	94	190	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-24	95	192	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.93E-26	99	190	No hit	No description
PROSITE profile	PS50863	12.365	101	192	IPR003340	B3 DNA binding domain
SMART	SM01019	5.4E-19	101	192	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-15	101	190	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDSKKLVNGK KNSAPFCIDE KRQKQMGKKK MPMEKKKAIA GRPKTLKSKA KQGTSDNATK 60 SGSKRKRTAT NDIYDDVEAK FTVMERAERV LSRLEDETPC FAKCMLPSNV TYSFWLIIPK 120 RFCSLHLPSQ DSTITLVDEW GKEYKTNYLI DRHGLSGGWR GFSIAHRLLK GDILIFCLIE 180 PCKLKVHIVR VHGVDAVNAA LCLMNMDASR KRKDAELAKQ DNKKRKRTMK YEESYMLDAP 240 KFPDEVKEKG KKVTKSNSLT LVDQSENNIE DSLSPVSKGS EIHDHLIPAD HRCSETSFLH 300 DHPCKGVTCR XTVHNCCCLP IENSLKRANP VQHLASHYHF AVLDGYDLGE KIVGSMIIRW 360 SYTCASKFCL LLES

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDSKKLVNGK KNSAPFCIDE KRQKQMGKKK MPMEKKKAIA GRPKTLKSKA KQGTSDNATK  60
SGSKRKRTAT NDIYDDVEAK FTVMERAERV LSRLEDETPC FAKCMLPSNV TYSFWLIIPK  120
RFCSLHLPSQ DSTITLVDEW GKEYKTNYLI DRHGLSGGWR GFSIAHRLLK GDILIFCLIE  180
PCKLKVHIVR VHGVDAVNAA LCLMNMDASR KRKDAELAKQ DNKKRKRTMK YEESYMLDAP  240
KFPDEVKEKG KKVTKSNSLT LVDQSENNIE DSLSPVSKGS EIHDHLIPAD HRCSETSFLH  300
DHPCKGVTCR XTVHNCCCLP IENSLKRANP VQHLASHYHF AVLDGYDLGE KIVGSMIIRW  360
SYTCASKFCL LLES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	226	KRKDAELAKQDNKKRKR
2	222	227	KKRKRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112469.1	1e-121	B3 domain-containing protein At5g42700-like isoform X2
TrEMBL	A0A068TMJ0	1e-118	A0A068TMJ0_COFCA; Uncharacterized protein
STRING	XP_009612758.1	1e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71