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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16198_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 369aa MW: 41947.4 Da PI: 9.2645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 101 | 190 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f k ++ps+v+ s +l++pk+f++ h + ++ t+tl de+g++++ ++ +++++ l++GW++F a++ cra_locus_16198_iso_2_len_1573_ver_3 101 FAKCMLPSNVTYSFWLIIPKRFCSLHL-P-SQDSTITLVDEWGKEYKTNYLIDRHG----LSGGWRGFSIAHR 167 889********************8884.3.35569***************888887....************* PP --TT-EEEEEE-SSSEE..EEEEE- CS B3 74 LkegDfvvFkldgrsefelvvkvfr 98 L gD+++F l++ + l+v+++r cra_locus_16198_iso_2_len_1573_ver_3 168 LLKGDILIFCLIEPCK--LKVHIVR 190 **********997444..5888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-21 | 94 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-24 | 95 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-26 | 99 | 190 | No hit | No description |
PROSITE profile | PS50863 | 12.365 | 101 | 192 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-19 | 101 | 192 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-15 | 101 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDSKKLVNGK KNSAPFCIDE KRQKQMGKKK MPMEKKKAIA GRPKTLKSKA KQGTSDNATK 60 SGSKRKRTAT NDIYDDVEAK FTVMERAERV LSRLEDETPC FAKCMLPSNV TYSFWLIIPK 120 RFCSLHLPSQ DSTITLVDEW GKEYKTNYLI DRHGLSGGWR GFSIAHRLLK GDILIFCLIE 180 PCKLKVHIVR VHGVDAVNAA LCLMNMELQE KEKMLDNKKR KRTMKYEESY MLDAPKFPDE 240 VKEKGKKVTK SNSLTLVDQS ENNIEDSLSP VSKGSEIHDH LIPADHRCSE TSFLHDHPCK 300 GVTCRXTVHN CCCLPIENSL KRANPVQHLA SHYHFAVLDG YDLGEKIVGS MIIRWSYTCA 360 SKFCLLLES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | KKRKRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112469.1 | 1e-117 | B3 domain-containing protein At5g42700-like isoform X2 | ||||
TrEMBL | A0A068TMJ0 | 1e-114 | A0A068TMJ0_COFCA; Uncharacterized protein | ||||
STRING | XP_009612758.1 | 3e-92 | (Nicotiana tomentosiformis) |