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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16006_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 24923.1 Da PI: 5.2681 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H cra_locus_16006_iso_1_len_776_ver_3 42 YTCTFCRREFRSAQALGGHMNVH 64 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.31E-6 | 39 | 69 | No hit | No description |
SMART | SM00355 | 0.0066 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-5 | 42 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
XSLSSNSTTS WMWNPNQEED DSWEIRAFEQ DSGNITWPPR SYTCTFCRRE FRSAQALGGH 60 MNVHRRDRAR LHQPSIHTGN PKANANTNAS SSVVATTNST LIIPAQEFVR NGGLCLLYSL 120 HSPNNGILNP NKVNSCMDSP STLLSISPFE GNNLVCPNYP PTTYTSTYPI TPQSVNSISI 180 CQSSNNTEPS ASNSNDNNNP DTGEIKKDLE IEEELDLELR LGRSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 37 | 64 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 37 | 64 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084413.1 | 6e-80 | zinc finger protein 10-like | ||||
Refseq | XP_027183021.1 | 6e-80 | zinc finger protein 10-like | ||||
TrEMBL | A0A068UXM0 | 1e-78 | A0A068UXM0_COFCA; Uncharacterized protein | ||||
STRING | Aquca_026_00394.1 | 5e-66 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |