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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15765_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 34863.2 Da PI: 9.6005 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 7e-38 | 16 | 73 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k+ cra_locus_15765_iso_1_len_1173_ver_3 16 PPQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRP 73 5689**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.863 | 18 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 18 | 72 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-24 | 19 | 72 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 20 | 56 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
DQNNEGQGGP NQPPPPPQKC PRCDSNNTKF CYYNNYSLTQ PRYFCKTCRR YWTQGGTLRN 60 VPVGGGCRKG KRPKTSSSST SSTTTPSSSS TGQRDTPVTR SSLPNPSPPP PAVPPVPLQQ 120 QLQLPPHLIQ TISGLPTSQS LRNLGWAGYG HGHAPPPTSS LYHSSGGLLS SLTAMQSFNR 180 PQTRINPPLM NLGGNSTGSN MPIFHGGGFN FPSTNSMIRS HQQQVQVQPQ MHQSIGYQGM 240 INDQDRDESE PLIYPPEQNL GGGQPSPAAA TTTLISSWNN HGDNNNNANP SGSSSSLNFW 300 NNSSGGGSAS SGNPNQWPNL PGFGSSP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |