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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15559_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 595aa MW: 64667.9 Da PI: 7.2377 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 4.1e-09 | 381 | 428 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_15559_iso_6_len_1968_ver_3 381 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 428 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-15 | 375 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.52E-10 | 375 | 432 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-15 | 377 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 377 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-6 | 381 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-10 | 383 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MDKEYFFNNG IPPPLQFEPV LHAWNTFSSG QDVNCSSEQS FLNSNWEKGT DQFTQLESTL 60 SSMVSSPVVP SSSSAAPNDA FAIRELIGKL GPLGGMSQPF PSVTNAAAAS SYIGSSVNNS 120 CYTTPLNSPP KLQGMPILNQ LAKENLPSLG NSMPMMNPPL PALSADPGFA ERAAKFSCFG 180 SRSFNGRTSQ IGLNNAELPY RSTTPMTGNG KLPRVASSPS LKQAGSPLEN RTSSQPQMET 240 RSINGLVSVS DKKLVNKFPP GTAGPSSNEE SSVSDQVPSG ENGPKTPNDL NSRKRKTISR 300 GKTKENDSSA PTTTANNKGS AENDDEQNAK XIQATDANAE EKTGGKTTEA KNDANKADQK 360 PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI 420 INYVQSLQRQ VEVXMALKTI TFYTSKTKAF CSFKANDCVI FLLQQFLSMK LASVNPRLEL 480 NTDNLISKDI FQANASLPQQ PLYHHVDSST PAFYGHQPQQ NPHLQQTNGS VDHPVVDTTL 540 CRNIGLQLPP LDGFSESLPQ FPSFTEEDLQ SIVQMGFQSQ GFPVTNQTSH MKVEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 296 | SRKRKT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027177979.1 | 0.0 | transcription factor bHLH62-like | ||||
TrEMBL | A0A140KER3 | 0.0 | A0A140KER3_9GENT; Uncharacterized protein | ||||
STRING | EMJ02381 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |