PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1542_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23730.3 Da PI: 9.6426 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.8 | 1.1e-12 | 56 | 100 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + + +G+g+W+ I+r + +t+ q+ s+ qky cra_locus_1542_iso_2_len_1406_ver_3 56 PWTEDEHRRFLLGLQAHGKGDWRNISRNFVRSKTPTQVASHAQKY 100 7*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-10 | 46 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.379 | 48 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 50 | 104 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 52 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-9 | 53 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-10 | 56 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.87E-9 | 56 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MATLYPPSSY MGNSNWILPQ NKSSRWTEEE NKQFESALAL IDERRTCDQE RKKGIPWTED 60 EHRRFLLGLQ AHGKGDWRNI SRNFVRSKTP TQVASHAQKY FLRQLSGGKD KKRPSIHDIT 120 TVHLPNTSPS DDNKSPNSSD KSAPSASSKL LLDWNNSNDG LLMVFDSNHG NESMESLFDI 180 ASRGHRYAAN ICTTANSRFH IQPTKYVHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110847.1 | 3e-86 | transcription factor DIVARICATA-like | ||||
Refseq | XP_027110848.1 | 3e-86 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-47 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A068V2E5 | 6e-85 | A0A068V2E5_COFCA; Uncharacterized protein | ||||
STRING | VIT_13s0019g03370.t01 | 2e-65 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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