PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_15373_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 275aa MW: 29397.6 Da PI: 9.4947

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15373_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.9	1.5e-30	67	120	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl cra_locus_15373_iso_1_len_1695_ver_3 67 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 120 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.42E-20	64	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	64	123	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-31	66	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	68	120	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-8	70	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
HHHHHHHHQP QPPPPPPPPA SQAQNTPSSQ PNSSAEFDSS ELGGNGGGSG GTGAASGGEE 60 PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL 120 YLKRMQGISN GGGGGGINGN ASMSAAGASD TDHLFASSPV PAHFLHPGRP NSDHYLPFVP 180 VTAMPPHHQM AAVVGHHPHH QQLQQQFRHF GTSPPNGQFE HPFLSRQSQP QPVQRMGTAL 240 HNSTSGMPSY VEDVESATAA SNGRKVLTLF PTGDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-32	67	123	1	57	Transcription factor LUX
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072991.1	1e-123	transcription factor MYBC1-like
Refseq	XP_027175468.1	1e-123	transcription factor MYBC1-like
TrEMBL	A0A068UCH0	1e-121	A0A068UCH0_COFCA; Uncharacterized protein
STRING	XP_009790047.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54