PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 397aa MW: 42955.9 Da PI: 6.8521

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15360_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	26	71	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + cra_locus_15360_iso_1_len_2072_ver_3 26 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 71 79****************************.*********985 PP
2	Myb_DNA-binding	57.5	3.2e-18	78	122	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T++Ed ++++a++ +G++ W++Iar ++ gRt++ +k++w++ cra_locus_15360_iso_1_len_2072_ver_3 78 RKPFTEDEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 122 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.426	21	72	IPR017930	Myb domain
SuperFamily	SSF46689	7.55E-31	23	119	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	25	74	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	26	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-26	27	79	IPR009057	Homeodomain-like
CDD	cd00167	3.43E-14	28	70	No hit	No description
PROSITE profile	PS51294	27.683	73	127	IPR017930	Myb domain
SMART	SM00717	1.4E-17	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-16	78	122	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-13	80	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.4E-24	80	126	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
XGSGGGGGGS SSSSSQVSKK SLDRVKGPWS PEEDAILSRL VSNFGARNWS LIARGIPGRS 60 GKSCRLRWCN QLDPAVKRKP FTEDEDRIIL QAHAIHGNKW ASIARLLPGR TDNAIKNHWN 120 STLRRRCIDP SKFKFESSNV LEDVSVEKSK GSSDETLSCG DVNSLKSLEG RDITSNENID 180 DDLYEGKTQI GDKTQTEIQC NPEPKDPPTL FRPRARISAF SVYSPVDVVE TSLPSAVAVS 240 SQGPLDQVPR PEAGISKLLQ GAYSDRLIPY QCGHGCCMSP DGGKLHSSLL GPEFVDYTEP 300 LSFPSHELAT LAADISNAAW RRSGLESICV KPLESAASAL PFISSHLQMG YPEEGMRTDG 360 LQFDKGTSSL AGMFSDALSN PLRMQAMQIN ANVGSRI

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

XGSGGGGGGS SSSSSQVSKK SLDRVKGPWS PEEDAILSRL VSNFGARNWS LIARGIPGRS  60
GKSCRLRWCN QLDPAVKRKP FTEDEDRIIL QAHAIHGNKW ASIARLLPGR TDNAIKNHWN  120
STLRRRCIDP SKFKFESSNV LEDVSVEKSK GSSDETLSCG DVNSLKSLEG RDITSNENID  180
DDLYEGKTQI GDKTQTEIQC NPEPKDPPTL FRPRARISAF SVYSPVDVVE TSLPSAVAVS  240
SQGPLDQVPR PEAGISKLLQ GAYSDRLIPY QCGHGCCMSP DGGKLHSSLL GPEFVDYTEP  300
LSFPSHELAT LAADISNAAW RRSGLESICV KPLESAASAL PFISSHLQMG YPEEGMRTDG  360
LQFDKGTSSL AGMFSDALSN PLRMQAMQIN ANVGSRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-42	23	126	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065851.1	1e-167	transcription factor MYB1-like
Swissprot	Q42575	6e-97	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A068UFY2	1e-165	A0A068UFY2_COFCA; Uncharacterized protein
STRING	VIT_08s0007g01540.t01	1e-156	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2611	24	54

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]