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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_15356_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
NAC |
| Protein Properties |
Length: 296aa MW: 32447.5 Da PI: 8.0935 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_15356_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 75.5 | 1.2e-23 | 62 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee.......vikev.diykvePwdLpkkvkaee 55
lp+G++F+P+d+e++ e+L++kv ++ + +i+ +i++++P++Lp
cra_locus_15356_iso_1_len_1360_ver_3 62 LPAGVKFDPSDQEII-EHLEAKVVVRSdlddgnklfiH---PlidefiqTIDGEnGICYTHPEKLPGV----- 125
799************.99**999888867666666651...044443323554445**********32..... PP
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhey 126
++ +++++ky+ + + + + ++tgk+++v++ kg+++g kk+Lv+y gr++k+ekt+Wvmh+y
cra_locus_15356_iso_1_len_1360_ver_3 126 SKDGLVHEKEEKYTPTSTAAK----PVGHKTGKTRPVIV-KGKVKGYKKILVLYtnYGRQRKPEKTNWVMHQY 193
333356788888865444444....4459**********.999***********66589************** PP
NAM 127 rl 128
+l
cra_locus_15356_iso_1_len_1360_ver_3 194 HL 195
98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MTCSNSKTDQ TSADHLHHHS NNGTNVDSQK IGNKIIMSCP SCGLSMKCQE KRSSGIKELP 60
GLPAGVKFDP SDQEIIEHLE AKVVVRSDLD DGNKLFIHPL IDEFIQTIDG ENGICYTHPE 120
KLPGVSKDGL VHEKEEKYTP TSTAAKPVGH KTGKTRPVIV KGKVKGYKKI LVLYTNYGRQ 180
RKPEKTNWVM HQYHLGNNED EKEGELVVSK VFYQTQPRQC GGGSGGGGSS VKDLSPPVKG 240
NGRSGHPSNN PHHLNNPVAL VEYYNSTLIS FDQCQGNQTG SRLVPNINIP DDSFLP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
