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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15344_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35562 Da PI: 9.8776 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.3e-32 | 58 | 129 | 57 | 129 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + yfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +g lvg+kktLvfykgrapkgekt+Wvmheyrle cra_locus_15344_iso_1_len_1097_ver_3 58 RFYFFSLRDRKYPTGMRTNRATEAGYWKTTGKDKEIFR-GGMLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 129 57************************************.********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.459 | 1 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-38 | 46 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 54 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
XGRGIATAAS SSRLKSCWFI IEEKRPRAVS LKTDSPFTIL SSCLPFSRME ENLPPGFRFY 60 FFSLRDRKYP TGMRTNRATE AGYWKTTGKD KEIFRGGMLV GMKKTLVFYK GRAPKGEKTN 120 WVMHEYRLEA KLAFKPTKEE WVVCRIFQKS STVKKPQQIT SSPHESMESA PCDTNTIATN 180 ELGDIELANF SNLAANSSSS NIIGISPVDV LNWNALREAA NVLPQLTSSW PHNSTPTMSP 240 NLLFRALQLR NIANTTDYNS LMIGASPQGI NSHFGNDFIT SSHIAAASGA SSSSRVIIDH 300 NSVQQPHQEQ PFNLDSNIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-30 | 59 | 155 | 73 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-30 | 59 | 155 | 73 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-30 | 59 | 155 | 73 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-30 | 59 | 155 | 73 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-30 | 59 | 155 | 73 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-30 | 59 | 155 | 73 | 171 | NAC domain-containing protein 19 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027124647.1 | 1e-103 | NAC domain-containing protein 46-like | ||||
Refseq | XP_027167280.1 | 1e-103 | NAC domain-containing protein 46 | ||||
TrEMBL | A0A068TSV3 | 1e-100 | A0A068TSV3_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0015s03700.1 | 8e-86 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |