PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TALE

Protein Properties

Length: 800aa MW: 87524.1 Da PI: 6.9938

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1516_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	580	617	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + cra_locus_1516_iso_1_len_2784_ver_3 580 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 617 664459******************************88 PP
2	BELL	120.8	6e-39	442	512	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q++k+kLl++l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ cra_locus_1516_iso_1_len_2784_ver_3 442 RLEHQRRKVKLLTMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTALAQKAMSRHFRCLKDAIAAQL 512 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-78	362	510	IPR006563	POX domain
Pfam	PF07526	2.7E-52	367	509	IPR006563	POX domain
PROSITE profile	PS50071	12.568	558	621	IPR001356	Homeobox domain
CDD	cd00086	1.16E-12	561	622	No hit	No description
SMART	SM00389	2.0E-9	561	625	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	563	628	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	564	627	IPR009057	Homeodomain-like
Pfam	PF05920	4.1E-18	578	617	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MGIATTHLLL PCHSKQQILV SNSDKSLLIN SMSEDYHNHH HQGFFSNFSN GFERSQQQQQ 60 HLQQHQHHMS QQIRRDKLRI QGFHEQQQPP PPHPPPPPLD AIEEVVESTG LNPVYETAGM 120 LSEMFNFTST AAGDISNLEN NYRNSRPPPP ATAESQWYGN NRQLGLMMGG NLGPLDETKN 180 QDIGNHDRDS TTTIATSTTH HHHRHQHHHP QQISGNINAD SASAAAAAMH LFLMNPQPRS 240 PSPPPPAASS STLHMLLPNQ GFHPHPPQFH LDASEIGGGG GGGIVEGQGL SLSLSSSLQH 300 LEKAEELRMG GDGHGMIFFN QGGGGGGTST PGAQYPNYKN MGAPLHLQSP NNQVHVGYGS 360 SIGMVNVLRN SKYAKAAQEL LEEFCSVGRG HLKKNKLLPK NNNNNPNPNS SNQCGGGNGG 420 GGNGGNSSSS SKDLPPLSAS DRLEHQRRKV KLLTMLDEVD RRYNHYCEQM QMVVNSFDLV 480 MGFGAAIPYT ALAQKAMSRH FRCLKDAIAA QLKQSCEMLG EKDAGTSGVT KGETPRLRLL 540 EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT 600 GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKEEEEAAEA DDQEEETTIT QTTDSTTNII 660 TQTPTPTNTA TANTAAITSS STRSKRSEIN DSENDPSLIA INTHCSFPEN QAKSSTSSLI 720 LPNTTTTTLP PQAYQYSAEA FRRGGGVGVI SGNPAEIGAS HHLVRFGTNA GDVSLTLGLR 780 HAGNLPQEKS TFSVRDFGGC

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MGIATTHLLL PCHSKQQILV SNSDKSLLIN SMSEDYHNHH HQGFFSNFSN GFERSQQQQQ  60
HLQQHQHHMS QQIRRDKLRI QGFHEQQQPP PPHPPPPPLD AIEEVVESTG LNPVYETAGM  120
LSEMFNFTST AAGDISNLEN NYRNSRPPPP ATAESQWYGN NRQLGLMMGG NLGPLDETKN  180
QDIGNHDRDS TTTIATSTTH HHHRHQHHHP QQISGNINAD SASAAAAAMH LFLMNPQPRS  240
PSPPPPAASS STLHMLLPNQ GFHPHPPQFH LDASEIGGGG GGGIVEGQGL SLSLSSSLQH  300
LEKAEELRMG GDGHGMIFFN QGGGGGGTST PGAQYPNYKN MGAPLHLQSP NNQVHVGYGS  360
SIGMVNVLRN SKYAKAAQEL LEEFCSVGRG HLKKNKLLPK NNNNNPNPNS SNQCGGGNGG  420
GGNGGNSSSS SKDLPPLSAS DRLEHQRRKV KLLTMLDEVD RRYNHYCEQM QMVVNSFDLV  480
MGFGAAIPYT ALAQKAMSRH FRCLKDAIAA QLKQSCEMLG EKDAGTSGVT KGETPRLRLL  540
EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT  600
GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKEEEEAAEA DDQEEETTIT QTTDSTTNII  660
TQTPTPTNTA TANTAAITSS STRSKRSEIN DSENDPSLIA INTHCSFPEN QAKSSTSSLI  720
LPNTTTTTLP PQAYQYSAEA FRRGGGVGVI SGNPAEIGAS HHLVRFGTNA GDVSLTLGLR  780
HAGNLPQEKS TFSVRDFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	567	624	1	58	Homeobox protein Meis1
4xrs_B	3e-16	567	624	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425771.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_006466698.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-167	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	V4SPH4	0.0	V4SPH4_9ROSI; Uncharacterized protein
STRING	XP_006466698.1	0.0	(Citrus sinensis)
STRING	XP_006425771.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]