PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15024_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Dof
Protein Properties Length: 312aa    MW: 33551.3 Da    PI: 8.9661
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15024_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3946106262
                                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                           ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+++
  cra_locus_15024_iso_3_len_1083_ver_3  46 KEAALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKHTT 106
                                           67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-263898IPR003851Zinc finger, Dof-type
PfamPF027019.4E-3449104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.99450104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
IGVVHQQQVN KGGIIEGGGG GGGAGAGALN SKSGSYERKA IIRPQKEAAL NCPRCNSTNT  60
KFCYYNNYSL TQPRYFCKTC RRYWTEGGTL RNVPVGGGSR KNKHTTSRSS SSSSNPHLKK  120
LNPDLTHNPN KIIPHQPHHD LNLAYNPVPP PPKSLVHDYG IISGGGGGAG GFLNFPMRHN  180
LPELELLKVG SSSLSSLMSM PLSDCNNSIF YPSSSSSSEI PNYKFNFSLD GSGVENNGNY  240
GISVQDNQPV VLHIRGGGDD AAAGRSLFLP YEELNLKTDH HEIEDQRRNK GESTTTGYCW  300
NGMLGGAAGS TW