PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14950_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 424aa    MW: 46630.5 Da    PI: 8.5872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14950_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-19326422195
                                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFv 69 
                                           f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     
  cra_locus_14950_iso_3_len_1765_ver_3 326 FEKILSASDAGRIGRLVLPKACAEAYfpTINQSEGVPIKIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCI 397
                                           99**************************777889999***************9989999999***9.****** PP

                                           HHHT--TT-EEEEEE-SSSEE..EEE CS
                                    B3  70 kangLkegDfvvFkldgrsefelvvk 95 
                                           +  +L++gD+v+F++++  +++lv++
  cra_locus_14950_iso_3_len_1765_ver_3 398 QNMQLQAGDTVTFSRIE-PSGQLVMG 422
                                           **************887.55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-29323424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-20324423IPR015300DNA-binding pseudobarrel domain
CDDcd100179.99E-25324424No hitNo description
PfamPF023628.5E-17326422IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392326424IPR003340B3 DNA binding domain
SMARTSM010192.2E-17326424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGANICMNEA CRTTTSLEWK KGWVLKSGGW ATLCQTCGIA YENLVFCDTF HLEEAGWREC  60
RICGKRLHCG CVASKFLHEC LDFGGVGCVK CAKRLESRSI RPTQILGDEI PNVTLPEIVQ  120
SAIANGSGRK FDAAGLMQMA NAMDINGPRQ LFVPQKDNTI ASLGQMKGKE IIPYAEVNEC  180
FNNFNQPSGG SSMFVSPEQI RSKQGVKDMF ESLAQPSLNF SLSTPMSSST LMLPFPGGVA  240
EGSEQNKASG SQQGQPARHI LPKPPKPGQT TSSEPNKGFV TKIRVARPPA EGRGRHQLLP  300
RYWPRITDQE IQQISGDLKS TISPLFEKIL SASDAGRIGR LVLPKACAEA YFPTINQSEG  360
VPIKIQDVKG KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QLQAGDTVTF SRIEPSGQLV  420
MGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-673044241121B3 domain-containing transcription repressor VAL1
5yzz_C2e-673044241121B3 domain-containing transcription repressor VAL1
5z00_C2e-673044241121B3 domain-containing transcription repressor VAL1
5z00_G2e-673044241121B3 domain-containing transcription repressor VAL1
5z00_K2e-673044241121B3 domain-containing transcription repressor VAL1
5z00_M2e-673044241121B3 domain-containing transcription repressor VAL1
6j9a_A2e-673044242122B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112468.10.0B3 domain-containing transcription repressor VAL1-like isoform X1
SwissprotQ6Z3U31e-129Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A068U8U90.0A0A068U8U9_COFCA; Uncharacterized protein
STRINGXP_009771757.10.0(Nicotiana sylvestris)
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]