PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14945_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 333aa MW: 37359.6 Da PI: 10.4223

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14945_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.3	4.6e-32	189	245	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle++++l k+rkpylheSRh hA++R Rg+gGrF cra_locus_14945_iso_3_len_1513_ver_3 189 DGPIYVNAKQYHGILRRRQMRAKLEAQNRL-LKNRKPYLHESRHLHAVNRVRGTGGRF 245 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-35	187	248	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.89	188	248	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-27	191	245	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	191	213	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	193	213	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	222	245	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAVRVQNLPR KTSRQDSIHQ MPHFTGNHSP WWNSQEQQFS QTLSKNIHFR VEHSPPRCQE 60 VETLGLQLRD KGSPSTLSSS QSPHELTTTT KTNSQDQCVS SESVQTQSYQ KRVGDQVNSA 120 FLMSNPEFSV NPSLMDMNQS TGHISFGAYA DPYFSGLFNA YGSQALQIQS QMAGMAPNRI 180 LLPPDLAQDG PIYVNAKQYH GILRRRQMRA KLEAQNRLLK NRKPYLHESR HLHAVNRVRG 240 TGGRFLSKKE QQQSVDPTPS RGSASSSVHS HRAEVQKSKT KERNDGPSNG NLFFQQPADH 300 NKISSVTDQM ALSMLGSGGF TGNEHRYRAP SFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	191	251	4	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065445.1	2e-97	nuclear transcription factor Y subunit A-3-like isoform X3
TrEMBL	A0A1S3XZP6	2e-92	A0A1S3XZP6_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X2
STRING	XP_009793846.1	1e-91	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38