PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14936_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 306aa    MW: 34997.5 Da    PI: 9.802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14936_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-232575151
                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                          k+ien++ rqvt+skR+ g++KKA+EL vLCd+++a i+fs++g+l  +ss
  cra_locus_14936_iso_5_len_1078_ver_3 25 KKIENSTARQVTYSKRKDGMIKKANELAVLCDIDIAFIMFSPSGRLTCFSS 75
                                          68********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.9081777IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-291776IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-241877IPR002100Transcription factor, MADS-box
CDDcd001201.69E-251875No hitNo description
PRINTSPR004041.0E-201939IPR002100Transcription factor, MADS-box
PfamPF003191.3E-222673IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-203954IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-205475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
XKICFSMHSR GNSSSNTTRN KLALKKIENS TARQVTYSKR KDGMIKKANE LAVLCDIDIA  60
FIMFSPSGRL TCFSSNRRFI YLHQLPPFFI SNRLLFLXXY SAKSYFSGFC RVEDVFLRFL  120
DRPDDLKGGS SARKELIIRN MMKLKYDAEM LEKIAEIESL EEKLGEFKKR KHEANIKMSH  180
YQPDLEKIHS SIEANAYLRF LEDSVKRIHV ARAKLLGKAV EPEELGNSKA TIINSEVSGL  240
SVFGESSTAS QYSGLQPPRG MSITSQELSV EDYLPMGTNM NRDYQMMAQN PQYMPSTRRF  300
SYPSNL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836