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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14860_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 407aa MW: 45623.2 Da PI: 8.5777 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 7.9e-11 | 319 | 376 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L+el+P+ + + K + a++L +Av+YIk+L cra_locus_14860_iso_3_len_1585_ver_3 319 SIAERVRRTRISERMKKLQELVPNmDKvssskayqPRQLYKXNTADMLDLAVHYIKDL 376 689*********************988******99888889***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.967 | 313 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 316 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.13E-10 | 317 | 379 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-11 | 318 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-8 | 319 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-8 | 319 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDSDDDSTNE NNSGLLRYRS APSSFLANFC SDIIGADDDD DHHHKRVKIS TIETETQWFM 60 TSGQQQSNSQ FSSHVLKDNS NDFALNSPQL PPHPQYPRSN AITQLNGGFL FRVQNSNLMR 120 QNSSPAGFFS HLSPQNANGY AGSAFPNGAS TGTSAVLSPS SNRFSSGNGI PSNLGMMLSR 180 ISESENENPI PGRTNNINIP DPEPDHQKLS NASNNRESQL YCPPLPFSSR NNNNNSSKYS 240 HNFTGFKTEI ENDHQGLFSD NHQGGEPRRN RSPMLSHHLS LPKISGEIVA MEKLLQFRDT 300 TTVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKVSSSK AYQPRQLYKX 360 NTADMLDLAV HYIKDLRKQY KTLSEFRANC RCSDTHKSVS VVDHEEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070406.1 | 4e-93 | transcription factor bHLH130-like | ||||
TrEMBL | A0A068UR53 | 6e-88 | A0A068UR53_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5194 | 24 | 37 |