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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14775_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SRS | ||||||||
Protein Properties | Length: 434aa MW: 45080.6 Da PI: 8.6257 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 216.7 | 5.2e-67 | 213 | 372 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 t++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + +a + +a ++++ s +k+ cra_locus_14775_iso_2_len_1879_ver_3 213 STTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLMVSAGPAAVTAGSTQSISSSKK 285 5789*********************************************999999888888888888888888 PP DUF702 77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsig 139 + s+++ ++s+t++s+++++++++t s lP +v+++avf+cvrv+svddge+e+aYq+ v ig cra_locus_14775_iso_2_len_1879_ver_3 286 PKLSSQTPTASRTSTSNTTPPRSFDTGSshqdasfketLPGQVRAPAVFKCVRVTSVDDGEDEYAYQAMVRIG 358 88889999999**************99999******************************************* PP DUF702 140 GhvfkGiLydqGle 153 GhvfkG+LydqG+e cra_locus_14775_iso_2_len_1879_ver_3 359 GHVFKGFLYDQGVE 372 ************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.8E-62 | 214 | 372 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.2E-27 | 216 | 258 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.4E-29 | 324 | 371 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
KNLSTVVATT RRLGSDSGTV TDWVAASSSS AARDLSLGFN AGPTAGGGGG GTGPGPTPGG 60 GGLTGMWSSS SNRQINYGIA SEMGMVGHLR DVFLVTPATT TTATNFHHHQ EPTSTINFDP 120 HHSINGSNSS AIGVNVIPLL TPCLAQPNVG VDEDLLLNNN RSNNRGGCAI QFWQNQTQPN 180 QRVSNSNFKK PSILDHSCRE IGSGSSINSA STSTTTCQDC GNQAKKDCSH RRCRTCCKSR 240 GFDCSTHVKS TWVPAARRRE RQLMVSAGPA AVTAGSTQSI SSSKKPKLSS QTPTASRTST 300 SNTTPPRSFD TGSSHQDASF KETLPGQVRA PAVFKCVRVT SVDDGEDEYA YQAMVRIGGH 360 VFKGFLYDQG VEGRDGSSSF PNISDLHLGG GGRNGGASSS SQAAAVAAAA MIDPSDVYAA 420 GLLGGSSNYG NQIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651514.2 | 1e-128 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 5e-81 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A438KG41 | 1e-127 | A0A438KG41_VITVI; protein lateral ROOT PRIMORDIUM 1 | ||||
STRING | XP_009604000.1 | 1e-125 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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