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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14743_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 570aa MW: 66084.5 Da PI: 5.3177 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.1 | 1.4e-29 | 418 | 503 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rW+k ev aLi++r++ e+++++ lk+ lWee+s+ m++ gf+rs+k+Ckekwen+nk++kk ke+ +k++ cra_locus_14743_iso_1_len_1801_ver_3 418 RWPKAEVEALIQIRSRFETNFQEPGLKGLLWEEISNEMAKMGFQRSAKRCKEKWENINKYFKKSKENPIKERR 490 8************************************************************************ PP trihelix 74 essstcpyfdqle 86 ++ +tc yfdql+ cra_locus_14743_iso_1_len_1801_ver_3 491 QKLKTCEYFDQLD 503 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 408 | 474 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.48 | 411 | 475 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.79E-5 | 413 | 482 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0015 | 415 | 477 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.86E-25 | 417 | 482 | No hit | No description |
Pfam | PF13837 | 2.3E-21 | 417 | 505 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
XRPSPIFNFN HNNNPYNYHQ FFQQFQNLPT THEFFNYQPH LIQPCTTTFE QQQYQEQQQI 60 RRFRTISIAT GSGAGVQLDF KSPPPPDLNE NSRFKNGGGG GRNQEDGGGN LVGGEQQQYV 120 PEVETRLEPS RCWENREDSA VRQPFWKQFC PDISEAKNIE RGIIEAKDKD QEEQPEMNQN 180 QNHHEDYNHD FDEETVQNSC LEAGKSRLFG ELEAICGHAS SSSCIGKSNH HHKSAAGSLI 240 INGGETLAEG TCLAPPALDQ SNHLNNASSD QTLDEVEEDE PFSRMVKKKR KKREKMKDDE 300 ISSMAQLFER LVKQLMDHQE ILYKKFVDMI ERIDKERKDR EEAWRKQESE VASKAHERTL 360 LASSSTKESS SNVFEYLERI TGKSMNLISP PIRDHEPPLE LSNNRSRNNV DQNVMSKRWP 420 KAEVEALIQI RSRFETNFQE PGLKGLLWEE ISNEMAKMGF QRSAKRCKEK WENINKYFKK 480 SKENPIKERR QKLKTCEYFD QLDQLYSKAQ EKGYYNIKEV DFEGSSNYGK FQVKKNHDDN 540 NHEEADHEDL VGQTEEGEEE DNKGESGHEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 292 | KKKRKKR |
2 | 287 | 291 | KKRKK |
3 | 289 | 294 | RKKREK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
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Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11622 | 9 | 11 |