PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_14555_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 358aa MW: 40979 Da PI: 6.4149

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14555_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.4	1.8e-23	261	342	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rW++ ev+aLi++r +e++l + ++ W+ev++ + g++r+p++C+ekwen+nk+yk++ e+ kkr cra_locus_14555_iso_1_len_1667_ver_3 261 RWPRTEVQALITVRVAIEHKLLVKGTQGSGWKEVAAGLCNLGYNRTPEKCREKWENINKYYKRTMESGKKR-- 331 8******************************************************************97.. PP trihelix 74 essstcpyfdqle 86 +++ pyf++l+ cra_locus_14555_iso_1_len_1667_ver_3 332 --RKSLPYFEELD 342 ..4569***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-4	252	320	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.468	254	318	IPR017877	Myb-like domain
CDD	cd12203	7.98E-18	260	324	No hit	No description
Pfam	PF13837	1.0E-19	260	344	No hit	No description
SuperFamily	SSF46689	8.97E-5	278	323	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
VHFQDNLNTF TGNSTEIRRL ENNPPNLEFL QVNYTGPNLT DFCNHGQGLD ENSLGCCNDL 60 GFLAQLACQD AHELFKINNS FAFADQNGGG GATRTITSPA LEQMRKGTDD EHRDITSQSR 120 FLEAELSSSD GDCEASKEAL NQEKRRMKML KLEMFLQGLI SQVMQKQDQM HKQVMEIVER 180 REQERIISEE ARKKQESERA KVDEEERVRE TLRSMALISF IQNLSYDNIE VPSSSESSYR 240 GKDCIGIENH GCVKDESSNR RWPRTEVQAL ITVRVAIEHK LLVKGTQGSG WKEVAAGLCN 300 LGYNRTPEKC REKWENINKY YKRTMESGKK RRKSLPYFEE LDMIYKRSLV TQGKAAES

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

VHFQDNLNTF TGNSTEIRRL ENNPPNLEFL QVNYTGPNLT DFCNHGQGLD ENSLGCCNDL  60
GFLAQLACQD AHELFKINNS FAFADQNGGG GATRTITSPA LEQMRKGTDD EHRDITSQSR  120
FLEAELSSSD GDCEASKEAL NQEKRRMKML KLEMFLQGLI SQVMQKQDQM HKQVMEIVER  180
REQERIISEE ARKKQESERA KVDEEERVRE TLRSMALISF IQNLSYDNIE VPSSSESSYR  240
GKDCIGIENH GCVKDESSNR RWPRTEVQAL ITVRVAIEHK LLVKGTQGSG WKEVAAGLCN  300
LGYNRTPEKC REKWENINKY YKRTMESGKK RRKSLPYFEE LDMIYKRSLV TQGKAAES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	332	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12884	16	20