PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14527_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 321aa MW: 36414.5 Da PI: 7.5268

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14527_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.1	6.9e-18	5	86	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++l +p kf+++ g + +t++ +sg W+v l+ r + g+ +++ GWkeFv+++ L+e++++vFk++g+ cra_locus_14527_iso_2_len_1026_ver_3 5 RQQLAIPEKFTSNVRGT--IGGIVTIRGPSGTIWNVGLT-RDNNGTLFFKYGWKEFVEDHCLQENEILVFKYKGD 76 5789*****777655..4558***********5.44445799************************9 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s+f v +f++ cra_locus_14527_iso_2_len_1026_ver_3 77 SSF--DVLIFDH 86 999..9999986 PP
2	B3	35.8	1.4e-11	216	293	3	85
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 +v+ + v ++ +++p k +++h ++k s++++l r+W v++ +r ++ +lt+GWk+F+ +n L+ cra_locus_14527_iso_2_len_1026_ver_3 216 TVMQAAQVYEKFYMTIPAKWTKDHLNDK--SQEIMLC-VGERKWFVTFAHRVYG--GLLTGGWKKFATDNFLE 283 677788999999**********7674..4467654.478***777776..47*********** PP TT-EEEEEE- CS B3 76 egDfvvFkld 85 e D+++F + cra_locus_14527_iso_2_len_1026_ver_3 284 EFDVCLFDII 293 *****965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	15.397	1	87	IPR003340	B3 DNA binding domain
SMART	SM01019	2.1E-11	4	87	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.9E-21	5	87	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.4E-15	5	86	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.57E-19	7	87	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.05E-18	7	85	No hit	No description
Gene3D	G3DSA:2.40.330.10	5.4E-17	209	309	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-13	213	309	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.41E-11	213	290	No hit	No description
SMART	SM01019	4.8E-5	214	311	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.814	214	311	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-9	216	294	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
SGEYRQQLAI PEKFTSNVRG TIGGIVTIRG PSGTIWNVGL TRDNNGTLFF KYGWKEFVED 60 HCLQENEILV FKYKGDSSFD VLIFDHKSFC EKEACYFVKK CRHGELGNSS KSKANGIESF 120 EVADGPQEEV ECTPHAKKSF EAANGPLQDH KSPPTINVLR SPVERKIQRK TKNKSIKRSF 180 LHSLELVSHR RPVTEEEKEK ALRMAVAASS EDSLITVMQA AQVYEKFYMT IPAKWTKDHL 240 NDKSQEIMLC VGERKWFVTF AHRVYGGLLT GGWKKFATDN FLEEFDVCLF DIITGTDYAG 300 VVLDVNIFRV VEDVIPPSQV K

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13043	8	17