PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14522_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family SRS
Protein Properties Length: 355aa    MW: 38404.8 Da    PI: 7.4648
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14522_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702230.92.2e-711352844154
                                DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 
                                            ++sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+++++++++++++++++++
  cra_locus_14522_iso_1_len_1867_ver_3 135 SGISCQDCGNQAKKDCAHMRCRTCCKSRGYNCPTHVKSTWVPAAKRRERQQQLASLQQQQQHQQNQQQQQQHQ 207
                                           5689****************************************************99888777666666555 PP

                                DUF702  77 elkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149
                                            l+ +++   ++tk +++++++ le+ ++P+evss+a+frcvrvss+d+ge+++aYqtav+igGhvfkGiLyd
  cra_locus_14522_iso_1_len_1867_ver_3 208 -LQLHHHHHRENTKRHRENPSSGLEVGNFPAEVSSPAIFRCVRVSSIDEGEDQYAYQTAVNIGGHVFKGILYD 279
                                           .457777788888889999999*************************************************** PP

                                DUF702 150 qGlee 154
                                           qG+e+
  cra_locus_14522_iso_1_len_1867_ver_3 280 QGPES 284
                                           ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-67136283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-27138180IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.6E-29235282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAGFFSLGGG GGGAGGGTQS GRATTSNNQE EESQNPNIGI SPENWFLYRN NQDEDNIPYN  60
KGFELWQYHQ QQQQQRHNHP AAVVQDLYPL DIGGGSSSSH HHGRLNLTSD EPNPRSGAAG  120
GFVMMRSSGS GGGGSGISCQ DCGNQAKKDC AHMRCRTCCK SRGYNCPTHV KSTWVPAAKR  180
RERQQQLASL QQQQQHQQNQ QQQQQHQLQL HHHHHRENTK RHRENPSSGL EVGNFPAEVS  240
SPAIFRCVRV SSIDEGEDQY AYQTAVNIGG HVFKGILYDQ GPESQYMATD QSSSGGGSGS  300
TSGVHQLNLI TGSSSGAAAA TTTTVTGPFI DPNSIYPAPL NTFMAGTQFF PPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560706.11e-107PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD406e-84SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0V0IDY81e-107A0A0V0IDY8_SOLCH; Uncharacterized protein
STRINGXP_009628752.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]