PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14431_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRF
Protein Properties Length: 634aa    MW: 67879.8 Da    PI: 7.4993
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14431_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.8e-24234278145
                                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  cra_locus_14431_iso_3_len_2419_ver_3 234 DPEPGRCRRTDGKKWRCSRDAIADHKYCERHMNRGRHRSRKPVEG 278
                                           79****************************************985 PP
2QLQ61.32.7e-21166202137
                                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                           ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k
  cra_locus_14431_iso_3_len_2419_ver_3 166 GPFTPSQWMELEHQALIYKYINANVPIPSYLLTPIRK 202
                                           59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-12166202IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.94167202IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.8E-15167201IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563234278IPR014977WRC domain
PfamPF088791.6E-20235277IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MDFGGVVGLD NGGLMCSETS AFATSSAISS DVTTAETKQK WYGSASFLKQ ERSGTNNTNT  60
IEDDWRSLKI AKTISDDFSS ASAAGSKSMP TSPLLRSTTN NSSSFLSDGH QQQMLSFSSP  120
NNNSHTFTLP YYHHPSSIAY ARNAIAGYGS SGGGLTMQGV LSGARGPFTP SQWMELEHQA  180
LIYKYINANV PIPSYLLTPI RKALDSAGLS AFTGLRPNSF GWGAFHLGFS NSNDPEPGRC  240
RRTDGKKWRC SRDAIADHKY CERHMNRGRH RSRKPVEGQS GHSVSGTTNN KLMPTTMPSS  300
SSSASASATV VPAGGSSSNN SLALSSHHHQ LNNNLQPSST ATQCSQPLHG DRSFLGKDNL  360
GERYQDTTTT GLSIISPAIS MKESHFSIPK QLNPFEESSR GGEFGQVCFD SLLNPLDRSS  420
SLVNCRNYGT SSEDIHDRES KSRNGGLHQF MDDWPNSRRP EQSWPDIDMH SERTQLSISI  480
PMAASDFMSS TSSPTNDKIA SSPLRLSQEL EATQMGLGVG TITNERNHRQ ANWIPISWES  540
SVGGPLGEVL HSTNNSSGDG KNPSALNLMS EGWDGSPRLA SSPTGVLQKA ALVSLSNSSA  600
GSSPRADNSK IMEGASLCSG VIGSTLMNSA LPAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094646.10.0growth-regulating factor 1-like
TrEMBLA0A068TXM50.0A0A068TXM5_COFCA; Uncharacterized protein
STRINGEOY156570.0(Theobroma cacao)
STRINGXP_009626682.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357