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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14421_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18104.2 Da PI: 7.602 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_14421_iso_4_len_869_ver_3 96 FSCNYCRRKFYSSQALGGHQNAH 118 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.43E-6 | 94 | 123 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKPLNTNLES EEDSEVSSQV ASNVSTQEIS PGPSKDSTTS SPCLTESIDL ERDLRPITLD 60 LTLGFNKNEG VQLQGMSEPS GEVIPHPPAS AVSRVFSCNY CRRKFYSSQA LGGHQNAHKR 120 ERTLAKRAMR MNMLSDRYAS LASLPLHGSA YRSLGVEAHA SMHQR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099753.1 | 1e-83 | zinc finger protein 4-like | ||||
Refseq | XP_027099754.1 | 1e-83 | zinc finger protein 4-like | ||||
Refseq | XP_027099755.1 | 1e-83 | zinc finger protein 4-like | ||||
TrEMBL | A0A068UAD4 | 4e-82 | A0A068UAD4_COFCA; Uncharacterized protein | ||||
STRING | Solyc01g005130.2.1 | 2e-75 | (Solanum lycopersicum) |