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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14377_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 30387.7 Da PI: 4.7801 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 26 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ ++v+++ +lG++ W++I+++++ gRt++++k++w+++l cra_locus_14377_iso_5_len_2319_ver_3 26 RGPFSPEEENIIVRLHSMLGNK-WAAISSHLP-GRTDNEIKNFWNSHL 71 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.298 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.59E-22 | 7 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 7 | 32 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.483 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-17 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 26 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.37E-12 | 28 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 33 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
IIAGLLRCGK SCRLRWTNYL RPDIKRGPFS PEEENIIVRL HSMLGNKWAA ISSHLPGRTD 60 NEIKNFWNSH LKKRATASMD QSSYQPSFFS ESSDDANLES QSTQHMVQWE RATLEAEIQL 120 SKDPLLLNSQ SAVKTENDYF LRLWNSEVGE SFRKVNDYEV ACQSPVSQVS SSTRDESSSG 180 VTIHTNDPPR VLLSPARTTN TQKHAENVSV KKDPEDHLIL GSESSKSYEL DESSDATMKL 240 LLDFPQGDEM EYLQEPVEDV SIYLQDPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-20 | 7 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103808.1 | 1e-116 | transcription factor MYB41-like | ||||
Refseq | XP_027103809.1 | 1e-116 | transcription factor MYB41-like | ||||
TrEMBL | A0A068UAM3 | 1e-112 | A0A068UAM3_COFCA; Uncharacterized protein | ||||
STRING | XP_010273102.1 | 7e-84 | (Nelumbo nucifera) |