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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14377_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 37aa MW: 4091.65 Da PI: 8.2263 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.3e-10 | 14 | 37 | 1 | 24 |
TSSS-HHHHHHHHHHHHHTTTT-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtW 24 +g+WT+eEd++lvd++++ G gtW cra_locus_14377_iso_2_len_1351_ver_3 14 KGAWTPEEDKILVDYINKNGHGTW 37 79********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 5 | 37 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.437 | 9 | 37 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-7 | 9 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 14 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-4 | 16 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 37 aa Download sequence Send to blast |
MGRSPCCDKG GVKKGAWTPE EDKILVDYIN KNGHGTW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022000398.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_022000399.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_027103808.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_027103809.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_027110329.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_027110330.1 | 1e-17 | transcription factor MYB41-like | ||||
Refseq | XP_027161745.1 | 1e-17 | transcription factor MYB41-like | ||||
Swissprot | Q9S9Z2 | 2e-16 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A068UAM3 | 2e-16 | A0A068UAM3_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A251STH2 | 2e-16 | A0A251STH2_HELAN; Putative homeodomain-like protein | ||||
TrEMBL | A0A438H9N8 | 1e-16 | A0A438H9N8_VITVI; Transcription factor MYB41 | ||||
STRING | Solyc04g074170.1.1 | 2e-16 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400016394 | 2e-16 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
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